Browse Element(s) Details


OsAffx.28831.1.S1_at

Description tigr:9635.m03984
TID=OsAffx.28831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3991011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39870Os.7009.1.S1_at10/117+23903241..23907299Eukaryotic peptide chain release factor subunit 1-2, putative, expressed
LOC_Os07g39880OsAffx.28830.1.S1_x_at11/117+23910139..23911495Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39890OsAffx.16645.1.S1_at10/117+23920672..23922066hypothetical protein
LOC_Os07g39900Os.22462.1.S1_at10/117+23924198..23929526Interferon-related developmental regulator family protein, expressed
LOC_Os07g39910OsAffx.28831.1.S1_at11/117+23931368..23933794pentatricopeptide, putative
LOC_Os07g39920Os.50873.1.S1_x_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39920Os.50281.1.S1_at11/117+23942843..23948733formin homology 2 domain-containing protein, putative, expressed
LOC_Os07g39930OsAffx.16646.1.S1_at11/117+23951710..23954078expressed protein
LOC_Os07g39940OsAffx.28832.1.S1_at10/117+23955321..23956573Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28831.1.S1_at--745--9511Chr07:23931938..23931962 (25 bp)
TCTCTCTGGCTGTCGGACTAATGGA
LOC_Os07g39910
OsAffx.28831.1.S1_at--395--10851Chr07:23931903..23931927 (25 bp)
TTGGTGCTTATGCAGCTGACCAGCT
LOC_Os07g39910
OsAffx.28831.1.S1_at--799--3851Chr07:23931888..23931912 (25 bp)
CTGACCAGCTGTTTCGGATGATACC
LOC_Os07g39910
OsAffx.28831.1.S1_at--596--8171Chr07:23931853..23931877 (25 bp)
GGAACATACATCCTACTGTCTAACA
LOC_Os07g39910
OsAffx.28831.1.S1_at--101--8731Chr07:23931837..23931861 (25 bp)
TGTCTAACACATATTCAGCTGCTGG
LOC_Os07g39910
OsAffx.28831.1.S1_at--317--131Chr07:23931825..23931849 (25 bp)
ATTCAGCTGCTGGACGTTGGGTCGA
LOC_Os07g39910
OsAffx.28831.1.S1_at--1151--4331Chr07:23931716..23931740 (25 bp)
CCATGTGTTTCTTGTTGGTGATACA
LOC_Os07g39910
OsAffx.28831.1.S1_at--772--5331Chr07:23931673..23931697 (25 bp)
GAAGTCTACCAATTCCTTGAAGTGA
LOC_Os07g39910
OsAffx.28831.1.S1_at--922--10831Chr07:23931603..23931627 (25 bp)
TTGTGTTGCATGATATGGAGCCTCA
LOC_Os07g39910
OsAffx.28831.1.S1_at--163--4711Chr07:23931542..23931566 (25 bp)
GCTGGCAGTTGGATTTGGACTTCTA
LOC_Os07g39910
OsAffx.28831.1.S1_at--312--1311Chr07:23931404..23931428 (25 bp)
AGATGTCAGGCGGTTTCATCATTTC
LOC_Os07g39910
Target Sequence 
TCTCTCTGGCTGTCGGACTAATGGAGATATGGAATTTGGTGCTTATGCAGCTGACCAGCTGTTTCGGATGATACCACAGC
ATGATGGAACATACATCCTACTGTCTAACACATATTCAGCTGCTGGACGTTGGGTCGATGCTGCAAGAGTTAGAAAGCTA
ATGCGTGATCGTGGGGTCAAGAAGGAGCCTGGGTGCAGTTGGATAGAAGTAGGAAGTAAAATCCATGTGTTTCTTGTTGG
TGATACAAAACATCCAGAAGCACAGGAAGTCTACCAATTCCTTGAAGTGATTGGTGCTAGGATGAGAAAGCTGGGATATG
TTCCTGATACAAAGTTTGTGTTGCATGATATGGAGCCTCATGAAAAGGAATACATATTATTTGCACATAGTGAGAAGCTG
GCAGTTGGATTTGGACTTCTAAAGTTGCCTCCTGGAGCTACAGTTACTGTTTTAAAAAACTTGAGAATATGTGGTGACTG
TCATACTGCAATGATGTTCATGTCAAAGGCGGTTGGACGGGAAATTGTTGTTAGAGATGTCAGGCGGTTTCATCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis