Browse Element(s) Details


OsAffx.28874.1.S1_x_at

Description tigr:9635.m04264
TID=OsAffx.28874.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant disease resistance response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4257011/11Dirigent-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein
LOC_Os07g42560NANA7+25464356..25466031hypothetical protein
LOC_Os07g42570OsAffx.28874.1.S1_x_at11/117+25467856..25468425Dirigent-like protein
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28874.1.S1_x_at--279--4131Chr07:25467973..25467997 (25 bp)
CGCATCCGCGTGTACATGCACGAGA
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--987--7431Chr07:25467982..25468006 (25 bp)
GTGTACATGCACGAGAGGTTCGCCG
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--442--2111Chr07:25467986..25468010 (25 bp)
ACATGCACGAGAGGTTCGCCGGCGC
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--18--4091Chr07:25468115..25468139 (25 bp)
CGAGCTCCGCGCTGATCGGCCGTTT
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--111--8711Chr07:25468127..25468151 (25 bp)
TGATCGGCCGTTTCCAGGGCGTCGT
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--379--3931Chr07:25468184..25468208 (25 bp)
CGGCGTCGTTCCAGTCGGCGATCAG
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--333--4011Chr07:25468187..25468211 (25 bp)
CGTCGTTCCAGTCGGCGATCAGCCT
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--968--3351Chr07:25468231..25468255 (25 bp)
CACGCCGGGAGCACGCTGTCCATGG
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--632--4131Chr07:25468244..25468268 (25 bp)
CGCTGTCCATGGTGGGCCCCGTGCT
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--776--871Chr07:25468324..25468348 (25 bp)
ATGGCGCGCGGGTACTGCGTCATGA
LOC_Os07g42570
OsAffx.28874.1.S1_x_at--1159--7831Chr07:25468334..25468358 (25 bp)
GGTACTGCGTCATGACGGCGGCGGC
LOC_Os07g42570
Target Sequence 
CGCATCCGCGTGTACATGCACGAGAGGTTCGCCGGCGCGAACGCGACGGCGCTGGCCGTGGTCCCGTCGCCGCTGGGCGC
GAACGAGGCGTTCGGCCGCGTCGCCGTGCTCGACGACGAGCTCCGCGACGGCCCGGACCGGGCGAGCTCCGCGCTGATCG
GCCGTTTCCAGGGCGTCGTCGCCGGGACGTCGCTGCCGGGGACGGCGCCGCCGGCGTCGTTCCAGTCGGCGATCAGCCTC
GTGTTCACCGCCGGCGAGCACGCCGGGAGCACGCTGTCCATGGTGGGCCCCGTGCTGGGGTTCGCCGGCGCCATCGAGCG
CCCCCTGGTGGGCGGCACCGGCGCGTTCAGGATGGCGCGCGGGTACTGCGTCATGACGGCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28874.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis