Browse Element(s) Details


OsAffx.28878.1.S1_at

Description tigr:9635.m04286
TID=OsAffx.28878.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4278011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28878.1.S1_at--90--2731Chr07:25625938..25625962 (25 bp)
AAGAATTGCAGGAGTATGGGCGTAT
LOC_Os07g42780
OsAffx.28878.1.S1_at--552--8371Chr07:25625956..25625980 (25 bp)
GGCGTATGGCTGTGTTTGCCTGCTA
LOC_Os07g42780
OsAffx.28878.1.S1_at--509--6851Chr07:25625969..25625993 (25 bp)
GTTTGCCTGCTATGGAGGCTGGTCA
LOC_Os07g42780
OsAffx.28878.1.S1_at--345--6211Chr07:25625983..25626007 (25 bp)
GAGGCTGGTCAACAGAATTGTCAGA
LOC_Os07g42780
OsAffx.28878.1.S1_at--611--31Chr07:25625999..25626023 (25 bp)
ATTGTCAGAGGAAGTGTTCACCGTC
LOC_Os07g42780
OsAffx.28878.1.S1_at--159--6192Chr07:25626006..25626030 (25 bp)
GAGGAAGTGTTCACCGTCACTTGCC
LOC_Os07g42780
OsAffx.28878.1.S1_at--460--7091Chr07:25626021..25626045 (25 bp)
GTCACTTGCCCCAAACATAGACAGG
LOC_Os07g42780
OsAffx.28878.1.S1_at--608--4371Chr07:25626031..25626055 (25 bp)
CCAAACATAGACAGGACTGGTCCAA
LOC_Os07g42780
OsAffx.28878.1.S1_at--492--6791Chr07:25626691..25626715 (25 bp)
GTTATCCCTAAAACCATACAAAGAG
LOC_Os07g42780
OsAffx.28878.1.S1_at--216--6051Chr07:25626713..25626737 (25 bp)
GAGATATGCACCATGCCCATACATG
LOC_Os07g42780
OsAffx.28878.1.S1_at--593--8231Chr07:25626740..25626764 (25 bp)
GGCAACGGGTGGAAAGAAGCTACTT
LOC_Os07g42780
Target Sequence 
AAGAATTGCAGGAGTATGGGCGTATGGCTGTGTTTGCCTGCTATGGAGGCTGGTCAACAGAATTGTCAGAGGAAGTGTTC
ACCGTCACTTGCCCCAAACATAGACAGGACTGGTCCAANNNTGACTATGTTATCCCTAAAACCATACAAAGAGATATGCA
CCATGCCCATACATGGGGGCAACGGGTGGAAAGAAGCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis