Browse Element(s) Details


OsAffx.2888.1.S1_at

Description tigr:9630.m03556
TID=OsAffx.2888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3717011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein
LOC_Os02g37220NANA2+22482259..22485830transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g37230OsAffx.15404.1.S1_at11/112+22487942..22489234hypothetical protein
LOC_Os02g37240OsAffx.27607.2.S1_s_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.27607.1.S1_at11/112+22489357..22494099hypothetical protein
LOC_Os02g37240OsAffx.24609.1.S1_at11/112+22489357..22494099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2888.1.S1_at--381--10672Chr03:1907776..1907800 (25 bp)
TTCCTTCTCATCGTCGCACGGAGGG
NONE
OsAffx.2888.1.S1_at--378--4312Chr03:1907774..1907798 (25 bp)
CCTTCTCATCGTCGCACGGAGGGCG
NONE
OsAffx.2888.1.S1_at--296--512Chr03:1907767..1907791 (25 bp)
ATCGTCGCACGGAGGGCGCGGCGCC
NONE
OsAffx.2888.1.S1_at--1153--1053Chr03:16064927..16065071 (24 bp)
AGGGACGGCGTCGGCAAAGCAGAGG
NONE
OsAffx.2888.1.S1_at--193--4571Chr02:22465886..22465910 (25 bp)
GCGCCGACGCTCATCTGACGAGAGA
LOC_Os02g37170
OsAffx.2888.1.S1_at--635--4511Chr02:22465884..22465908 (25 bp)
GCCGACGCTCATCTGACGAGAGAGA
LOC_Os02g37170
OsAffx.2888.1.S1_at--443--4231Chr02:22465883..22465907 (25 bp)
CCGACGCTCATCTGACGAGAGAGAG
LOC_Os02g37170
OsAffx.2888.1.S1_at--1099--5791Chr02:22465881..22465905 (25 bp)
GACGCTCATCTGACGAGAGAGAGAA
LOC_Os02g37170
OsAffx.2888.1.S1_at--579--4131Chr02:22465879..22465903 (25 bp)
CGCTCATCTGACGAGAGAGAGAAGG
LOC_Os02g37170
OsAffx.2888.1.S1_at--893--4151Chr02:22465838..22465862 (25 bp)
CCCACAATTTGGCTAGGTTATTTTG
LOC_Os02g37170
OsAffx.2888.1.S1_at--641--4371Chr02:22465837..22465861 (25 bp)
CCACAATTTGGCTAGGTTATTTTGG
LOC_Os02g37170
Target Sequence 
TTCCTTCTCATCGTCGCACGGAGGGCGCGGCGCCGGCAAAGGACGACGATGGCAGAGGGACGGCGTCGGCAAAGCAGAGG
GCAGCGCCGTGGAGGGGCGGCGCTGTGGAGGGGCGGCGCGGAGGGACAGTGGCGCGGAGGGGCGACGGCGGCGTAGGGGC
GGCGCGTGGAAGGGTGGCGCGGAGGGGCGCCGCCAGCGGAGGGGCGGTGGGGCGGAGCCGGCGGACGGGCAGCGGCGCGA
AGCGGCGAAGGCGCGGCGCCGACGCTCATCTGACGAGAGAGAGAAGGGGGAAAAGAGATGGGACCCACAATTTGGCTAGG
TTATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis