Browse Element(s) Details


OsAffx.28890.1.S1_at

Description tigr:9635.m04397
TID=OsAffx.28890.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g438309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43780OsAffx.22848.4.S1_at3/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43780OsAffx.22848.4.S1_x_at2/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43790NANA7+26198027..26202728retrotransposon protein, putative, unclassified
LOC_Os07g43800Os.37996.1.S1_at11/117+26206842..26207760EF hand family protein, expressed
LOC_Os07g43810Os.14271.1.S1_at11/117+26210054..2621214729 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed
LOC_Os07g43820Os.41106.1.S1_at11/117+26213400..26214563Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os07g43830OsAffx.28890.1.S1_at9/117+26215878..26217250expressed protein
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28890.1.S1_at--186--4151Chr07:26216848..26216872 (25 bp)
CGCGTCGGCGAGCACTGGTGGTACC
LOC_Os07g43830
OsAffx.28890.1.S1_at--1050--6291Chr07:26216734..26216758 (25 bp)
GATGATGACCATCGTCCGCCGCAAG
LOC_Os07g43830
OsAffx.28890.1.S1_at--305--4231Chr07:26216716..26216740 (25 bp)
CCGCAAGCTCGCAGTACGAGTGTAG
LOC_Os07g43830
OsAffx.28890.1.S1_at--575--1871Chr07:26216701..26216725 (25 bp)
ACGAGTGTAGGCAACGAGCAGCATC
LOC_Os07g43830
OsAffx.28890.1.S1_at--1054--5931Chr07:26216686..26216710 (25 bp)
GAGCAGCATCGAATATCTCGCCGTG
LOC_Os07g43830
OsAffx.28890.1.S1_at--1013--4971Chr07:26216681..26216705 (25 bp)
GCATCGAATATCTCGCCGTGATCCT
LOC_Os07g43830
OsAffx.28890.1.S1_at--264--9271Chr07:26216660..26216684 (25 bp)
TCCTCCCGACGAACATGAACAGCAT
LOC_Os07g43830
OsAffx.28890.1.S1_at--468--671NONE
ATGAACAGCATGTCCCGCAATTCGT
NONE
OsAffx.28890.1.S1_at--90--771NONE
ATGTCCCGCAATTCGTGGAGGCCGT
NONE
OsAffx.28890.1.S1_at--458--3991Chr07:26215932..26215956 (25 bp)
CGTGGAGGCCGTGCTGATTGGTCTG
LOC_Os07g43830
OsAffx.28890.1.S1_at--539--31Chr07:26215916..26215940 (25 bp)
ATTGGTCTGCTGGTTGTCGCAGCCG
LOC_Os07g43830
Target Sequence 
CGCGTCGGCGAGCACTGGTGGTACCACGCCGGCATGAGGGCCTTCTTCGACGACGAGCGGCAGTACGCGGCGGCGACGGC
GGCGGCGCGGCCGCCGTCGTGTGGGAAGGAGAGCGATGATGACCATCGTCCGCCGCAAGCTCGCAGTACGAGTGTAGGCA
ACGAGCAGCATCGAATATCTCGCCGTGATCCTCCCGACGAACATGAACAGCATGTCCCGCAATTCGTGGAGGCCGTGCTG
ATTGGTCTGCTGGTTGTCGCAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis