Browse Element(s) Details


OsAffx.28924.2.S1_at

Description tigr:9635.m04630
TID=OsAffx.28924.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4607011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46030Os.32803.2.S1_at1/117+27467151..27470735expressed protein
LOC_Os07g46040Os.31644.3.S1_at3/117+27471744..27480437hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_x_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46050OsAffx.28922.1.S1_at11/117+27482682..27483031hypothetical protein
LOC_Os07g46060OsAffx.30966.4.S1_x_at11/117+27484876..27489453expressed protein
LOC_Os07g46060OsAffx.30966.4.S1_at10/117+27484876..27489453expressed protein
LOC_Os07g46060Os.9778.1.S2_at8/117+27484876..27489453expressed protein
LOC_Os07g46070OsAffx.28924.2.S1_at11/117+27494320..27496001hypothetical protein
LOC_Os07g46080OsAffx.30966.4.S1_x_at5/117+27500142..27505460hypothetical protein
LOC_Os07g46090OsAffx.30966.4.S1_x_at1/117+27508311..27512614expressed protein
LOC_Os07g46090Os.9778.1.S1_at1/117+27508311..27512614expressed protein
LOC_Os07g46100OsAffx.16731.1.S1_at11/117+27513445..27514716hypothetical protein
LOC_Os07g46110NANA7+27516367..27519698transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28924.2.S1_at--328--3051Chr07:27494914..27494938 (25 bp)
AATCTGTACTATGCCTATGCCTTCG
LOC_Os07g46070
OsAffx.28924.2.S1_at--836--7011Chr07:27494919..27494943 (25 bp)
GTACTATGCCTATGCCTTCGACAAA
LOC_Os07g46070
OsAffx.28924.2.S1_at--1036--6211Chr07:27495157..27495181 (25 bp)
GATGGAAACCATCATACAACCGTGG
LOC_Os07g46070
OsAffx.28924.2.S1_at--381--5551Chr07:27495161..27495185 (25 bp)
GAAACCATCATACAACCGTGGGAAA
LOC_Os07g46070
OsAffx.28924.2.S1_at--1109--8291Chr07:27495714..27495738 (25 bp)
GGCTCTAATGGTTTATTAAGGGTAG
LOC_Os07g46070
OsAffx.28924.2.S1_at--474--3791Chr07:27495772..27495796 (25 bp)
CTCCGCCACTGACGGTTGGGACGAC
LOC_Os07g46070
OsAffx.28924.2.S1_at--139--8371Chr07:27495859..27495883 (25 bp)
GGCGGTCCCACGAACTGGATGAGAT
LOC_Os07g46070
OsAffx.28924.2.S1_at--1083--6291Chr07:27495876..27495900 (25 bp)
GATGAGATCGGAAGCCTTGCTCCAT
LOC_Os07g46070
OsAffx.28924.2.S1_at--971--8171Chr07:27495885..27495909 (25 bp)
GGAAGCCTTGCTCCATGCAAAACTG
LOC_Os07g46070
OsAffx.28924.2.S1_at--222--4452Chr07:27495889..27495913 (25 bp)
GCCTTGCTCCATGCAAAACTGCAAA
LOC_Os07g46070
OsAffx.28924.2.S1_at--812--5971Chr07:27495925..27495949 (25 bp)
GAGAAACAAACTTGCAACGACAGAA
LOC_Os07g46070
Target Sequence 
AATCTGTACTATGCCTATGCCTTCGACAAATACATGGAAGGAGGTGTGTTTGCTCCAAAGAGGATCAACCTCAGCAACTT
TGCGATAGATTCTATAAACTCTGACATGTCCAAGAATCAGCTGTACGGGATCCGGATGATGCACACTTTTCTGCAAAGAG
ATCCGACAAGAGCACAACTCCTGGAGAAACTCACCACTTCAACGCAGACGAAGGCCAGGTTGATCAACATGTTGGACTGG
ACTGATGGAAACCATCATACAACCGTGGGAAAAAAACAAAAAGAAAAGAGAAACCGAGGTTGTAACGGGGGCTCTAATGG
TTTATTAAGGGTAGAGGGGTCTAAAGACCCTCCAGCCCCCACGCTGCCTCCGCCACTGACGGTTGGGACGACGGCGGTGG
GGAGCGGCGGCGGCGGCGGCGGTGGCGGTGGGGATGAGGGTGGGGAGCGGTGGCGGCGGTCCCACGAACTGGATGAGATC
GGAAGCCTTGCTCCATGCAAAACTGCAAATGAAAGAAGCAGAGAAACAAACTTGCAACGACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28924.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis