Browse Element(s) Details


OsAffx.28926.1.S1_at

Description tigr:9635.m04638
TID=OsAffx.28926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4615011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46110NANA7+27516367..27519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.47463.1.S1_x_at5/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46120Os.14491.2.S1_x_at4/117+27522021..27525721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g46130OsAffx.30966.4.S1_x_at2/117+27526858..27531683expressed protein
LOC_Os07g46140Os.35344.18.S1_x_at9/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140Os.35344.3.S1_x_at8/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46140OsAffx.22940.5.S1_x_at3/117+27534488..27540516Transposable element protein, putative, MuDR
LOC_Os07g46150OsAffx.28926.1.S1_at11/117+27541672..27542187hypothetical protein
LOC_Os07g46160Os.11898.1.S1_at11/117+27543582..27548736speckle-type POZ protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_x_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170Os.16136.1.S1_at11/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46170OsAffx.28927.1.S1_at9/117+27549204..27553491rhomboid protein, putative, expressed
LOC_Os07g46180Os.12940.1.S1_at10/117+27554178..27565323PWWP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28926.1.S1_at--994--8591Chr07:27542072..27542096 (25 bp)
TGGTCGAGGACAGGCCGGTTGCGCA
LOC_Os07g46150
OsAffx.28926.1.S1_at--220--4591Chr07:27542052..27542076 (25 bp)
GCGCAGGAGGCTTGGGTCGTCAGGT
LOC_Os07g46150
OsAffx.28926.1.S1_at--69--5351Chr07:27541998..27542022 (25 bp)
GAAGCCGACGTATCCCCGAGCGGGA
LOC_Os07g46150
OsAffx.28926.1.S1_at--416--551Chr07:27541987..27542011 (25 bp)
ATCCCCGAGCGGGATGGCACAGAGA
LOC_Os07g46150
OsAffx.28926.1.S1_at--269--8011Chr07:27541976..27542000 (25 bp)
GGATGGCACAGAGAGTGTACTCGAC
LOC_Os07g46150
OsAffx.28926.1.S1_at--363--2651Chr07:27541917..27541941 (25 bp)
AAGCCAACGGAGAACTGGGAGACGT
LOC_Os07g46150
OsAffx.28926.1.S1_at--144--8471Chr07:27541877..27541901 (25 bp)
TGGCGGCGACGAAGTGCCCCGACTT
LOC_Os07g46150
OsAffx.28926.1.S1_at--725--9131Chr07:27541863..27541887 (25 bp)
TGCCCCGACTTGTGGACGAGGACGA
LOC_Os07g46150
OsAffx.28926.1.S1_at--512--4091Chr07:27541802..27541826 (25 bp)
CGACGCTAGCGAGGACGTCGGACAA
LOC_Os07g46150
OsAffx.28926.1.S1_at--81--5811Chr07:27541739..27541763 (25 bp)
GACGCCATGTCGTTGAACCGTCGGC
LOC_Os07g46150
OsAffx.28926.1.S1_at--764--9351Chr07:27541730..27541754 (25 bp)
TCGTTGAACCGTCGGCTCCTGGAGA
LOC_Os07g46150
Target Sequence 
TGGTCGAGGACAGGCCGGTTGCGCAGGAGGCTTGGGTCGTCAGGTGGGAAGCCGAAGTCCGGGTCGTCGTCGGGGAAGCC
GACGTATCCCCGAGCGGGATGGCACAGAGAGTGTACTCGACGGGGGCGAGGCGAAAATGCGCGAGGGCCGGGGTGAAGCC
AACGGAGAACTGGGAGACGTGGATGCCGTCGGACGTGGCGGCGACGAAGTGCCCCGACTTGTGGACGAGGACGATGGAGG
CGAGGACGGAGGCGGCGGAGTCGACCGACTCGACGCTAGCGAGGACGTCGGACAAGGGGTCGCCGCCGCGTCGCCGGCCG
CCAAACCTCTCGCGACGCCATGTCGTTGAACCGTCGGCTCCTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis