Browse Element(s) Details


OsAffx.28959.1.S1_s_at

Description tigr:9635.m04927
TID=OsAffx.28959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=VQ motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4880011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os07g48820Os.10220.1.S1_at11/117+29211788..29215712Transcription factor HBP-1b, putative, expressed
LOC_Os07g48830Os.2677.1.S1_at11/117+29218623..29220150galactinol synthase 3, putative, expressed
LOC_Os07g48840Os.31656.2.S1_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48840Os.31656.1.S1_x_at11/117+29223592..29226808Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g48850Os.31656.3.S1_at11/117+29226061..29231067pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28959.1.S1_s_at--686--1051Chr07:29205708..29205732 (25 bp)
AGGGTGGTGTACATAGCCAGCCCCA
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--949--291Chr07:29205696..29205720 (25 bp)
ATAGCCAGCCCCATGAAGCTGACGG
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--586--531Chr07:29205615..29205639 (25 bp)
ATCGCCGACCGTCACTACGTTGACT
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--1007--2011Chr07:29205602..29205626 (25 bp)
ACTACGTTGACTCCACCATTGATCT
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--478--4471Chr07:29205559..29205583 (25 bp)
GCCTCCAGCATACTGTGCCAGTTAT
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--1094--311Chr07:29205550..29205574 (25 bp)
ATACTGTGCCAGTTATGCTGCGTCG
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--915--9151Chr07:29205467..29205491 (25 bp)
TGCCGCCGCAAACATTTCAGTCGTA
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--601--10511Chr07:29205452..29205476 (25 bp)
TTCAGTCGTATGATCACGGCGGACA
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--815--2211Chr07:29205430..29205454 (25 bp)
ACAAGGGCACCGCTGGTAGACAACA
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--699--7851Chr07:29205416..29205440 (25 bp)
GGTAGACAACACTATTACTCCTAAT
LOC_Os07g48800
OsAffx.28959.1.S1_s_at--533--1971Chr07:29205285..29205309 (25 bp)
ACTGCAGGGCTGTAAAATTATTGTA
LOC_Os07g48800
Target Sequence 
AGGGTGGTGTACATAGCCAGCCCCATGAAGCTGACGGCGAGCCCCGAGGAGTTCCGCGCCGTCGTGCAGGAGCTCACCGG
CCGCCACTCCAACATCGCCGACCGTCACTACGTTGACTCCACCATTGATCTCCCGCCGCCGCCGCCGCCGCCTCCAGCAT
ACTGTGCCAGTTATGCTGCGTCGGCCACGGCGGCGGCGCCTCCCGTCGCAGCTGTACCACCGCCGGTGCTGACTCCGCCG
TTGCCGCCGCAAACATTTCAGTCGTATGATCACGGCGGACAAGGGCACCGCTGGTAGACAACACTATTACTCCTAATTAG
TAGATGAATAATAATGTATATATATGGAGGTTAAATTATATTATTATCTAGGAAATCAATTGAATTCACTCATAGTGAAA
TAATTAAGTTTTGTCTAGTTGAAACTGCAGGGCTGTAAAATTATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28959.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis