Browse Element(s) Details


OsAffx.29006.1.S1_at

Description tigr:9636.m00210
TID=OsAffx.29006.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lectin-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0303010/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g032001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03010Os.45173.1.S1_x_at6/118+1319607..1326240retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03010Os.45173.5.S1_x_at4/118+1319607..1326240retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g03020Os.50872.1.S1_at11/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03020OsAffx.29006.3.S1_x_at6/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03020OsAffx.29007.1.S1_at1/118+1334443..1337038Legume lectins beta domain containing protein, expressed
LOC_Os08g03030OsAffx.29006.1.S1_at10/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03030OsAffx.21754.1.S1_x_at2/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03040NANA8+1358627..1359473lectin protein kinase, putative
LOC_Os08g03050OsAffx.16800.1.S1_at11/118+1361372..1361578hypothetical protein
LOC_Os08g03060NANA8+1362595..1362822hypothetical protein
LOC_Os08g03070Os.54803.1.S1_at11/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03070OsAffx.29007.1.S1_at1/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03080OsAffx.5689.1.S1_at10/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03080OsAffx.9652.1.S1_x_at1/118+1370733..1379852Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29006.1.S1_at--344--1131Chr08:1349605..1349629 (25 bp)
AGTGCTATCGGCCAAGATGCCCGTG
LOC_Os08g03030
OsAffx.29006.1.S1_at--440--6351Chr08:1349590..1349614 (25 bp)
GATGCCCGTGCCAATGTACGCGCCG
LOC_Os08g03030
OsAffx.29006.1.S1_at--989--6211Chr08:1349563..1349587 (25 bp)
GATGGCCTCGTTTGACGGGCTAGCT
LOC_Os08g03030
OsAffx.29006.1.S1_at--481--7591Chr08:1349547..1349571 (25 bp)
GGGCTAGCTGTTTGCGTCATCTACA
LOC_Os08g03030
OsAffx.29006.1.S1_at--341--7132Chr08:1349532..1349556 (25 bp)
GTCATCTACAGGGATGTCGTCGTCC
LOC_Os08g03030
OsAffx.29006.1.S1_at--991--7191NONE
GTCGTCGTCCTCAGCATTAGAATAA
NONE
OsAffx.29006.1.S1_at--1070--4031Chr08:1349151..1349175 (25 bp)
CGATAGTAGCTACTGCAGCAGCACT
LOC_Os08g03030
OsAffx.29006.1.S1_at--516--5051Chr08:1349137..1349161 (25 bp)
GCAGCAGCACTACAATTGAGGCGAA
LOC_Os08g03030
OsAffx.29006.1.S1_at--1155--891Chr08:1349119..1349143 (25 bp)
AGGCGAATCAAACGATCGGCCCATT
LOC_Os08g03030
OsAffx.29006.1.S1_at--1015--1873Chr08:1471099..1471123 (25 bp)
ACGATCGGCCCATTACAATTGAAGG
NONE
OsAffx.29006.1.S1_at--873--8652Chr08:1471054..1471078 (25 bp)
TGGGCCATTGCCTACAGAACGAATT
NONE
Target Sequence 
AGTGCTATCGGCCAAGATGCCCGTGCCAATGTACGCGCCGCCGATGGCCTCGTTTGACGGGCTAGCTGTTTGCGTCATCT
ACAGGGATGTCGTCGTCCTCAGCATTAGAATAAGTCGAGTGAGGGACATGGGCAACGATAGTAGCTACTGCAGCAGCACT
ACAATTGAGGCGAATCAAACGATCGGCCCATTACAATTGAAGGGGTGGTCGCCATCCTCCTCATGGGCCATTGCCTACAG
AACGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis