Browse Element(s) Details


OsAffx.29070.1.S1_at

Description tigr:9635.m00580
TID=OsAffx.29070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to hepatocarcinoma high expression protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g064108/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06355NANA7+3090114..3093055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06380OsAffx.28306.1.S1_x_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06380OsAffx.28306.1.S1_at11/117+3100011..3102541Peroxidase family protein
LOC_Os07g06390Os.52911.1.S1_at11/117+3103584..3107790expressed protein
LOC_Os07g06390Os.10342.1.S1_s_at1/117+3103584..3107790expressed protein
LOC_Os07g06400OsAffx.16122.1.S1_at11/117+3108246..3109085hypothetical protein
LOC_Os07g06410Os.49488.1.S1_at11/117+3109954..3112260expressed protein
LOC_Os07g06410OsAffx.29070.1.S1_at8/117+3109954..3112260expressed protein
LOC_Os07g06420NANA7+3113757..3113975expressed protein
LOC_Os07g06430OsAffx.5727.1.S1_at11/117+3114724..3115479hypothetical protein
LOC_Os07g06440OsAffx.29070.1.S1_s_at11/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.5861.1.S1_at10/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_at5/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440OsAffx.29070.2.S1_x_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06440Os.49488.1.S1_at4/117+3117115..3120785hydrolase, TatD family protein, expressed
LOC_Os07g06450Os.12608.1.S1_at11/117+3120928..3122903RNA recognition motif family protein, expressed
LOC_Os07g06460OsAffx.5232.1.S1_s_at11/117+3123214..3124011expressed protein
LOC_Os07g06460OsAffx.5232.1.S1_at11/117+3123214..3124011expressed protein
LOC_Os07g06470OsAffx.5233.1.S1_at11/117+3126100..3128469CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os07g06480OsAffx.28307.1.S1_at11/117+3128829..3129099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004536molecular_functiondeoxyribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29070.1.S1_at--405--4831Chr07:3110555..3110579 (25 bp)
GCTCAGCTGCTTCGATGCGGCTTGC
LOC_Os07g06410
OsAffx.29070.1.S1_at--663--3751Chr07:3110556..3110580 (25 bp)
CTCAGCTGCTTCGATGCGGCTTGCT
LOC_Os07g06410
OsAffx.29070.1.S1_at--730--9651Chr07:3110557..3110581 (25 bp)
TCAGCTGCTTCGATGCGGCTTGCTT
LOC_Os07g06410
OsAffx.29070.1.S1_at--890--3391Chr07:3110558..3110582 (25 bp)
CAGCTGCTTCGATGCGGCTTGCTTT
LOC_Os07g06410
OsAffx.29070.1.S1_at--944--611Chr07:3110569..3110593 (25 bp)
ATGCGGCTTGCTTTGACTATGTTCT
LOC_Os07g06410
OsAffx.29070.1.S1_at--597--9131Chr07:3110570..3110594 (25 bp)
TGCGGCTTGCTTTGACTATGTTCTC
LOC_Os07g06410
OsAffx.29070.1.S1_at--872--4691Chr07:3110571..3110595 (25 bp)
GCGGCTTGCTTTGACTATGTTCTCC
LOC_Os07g06410
OsAffx.29070.1.S1_at--276--3951Chr07:3110572..3110596 (25 bp)
CGGCTTGCTTTGACTATGTTCTCCT
LOC_Os07g06410
OsAffx.29070.1.S1_at--659--3011NONE
AATCTGCATAGTGAAAATTTCGAGG
NONE
OsAffx.29070.1.S1_at--574--4951Chr07:3112339..3112360 (22 bp)
GCATAGTGAAAATTTCGAGGTTCTA
NONE
OsAffx.29070.1.S1_at--413--11Chr07:3112339..3112362 (24 bp)
ATAGTGAAAATTTCGAGGTTCTACA
NONE
Target Sequence 
GCTCAGCTGCTTCGATGCGGCTTGCTTTGACTATGTTCTCCTTGGTGCCTTCAAGGAGTTTGAGGAGAGTGGAGACCCGA
AAGGGCATTTCCAGGCGCTGCTGGCTCTGGCGAAGGAAGGAATCGCGAAAGGCAAGGTTGTAGCAGTGGGAGAATGTGGT
CTGGATTATGATCGACTTCACTTTTGTCCATCGGATGTACAGAAGAAGTACTTCAAGAAGCAATTTGAATTGGCTGAAGC
AGTAAAACTGCCAATGTTTCTTCACATGAGGGCTGCTGGTGAAGACTTCTGTGAGATTGTATCAGAAAATCTGCATAGTG
AAAATTTCGAGGTTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis