Browse Element(s) Details


OsAffx.29070.2.S1_x_at

Description tigr:9636.m00624
TID=OsAffx.29070.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At3g52390
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0688010/11expressed protein
LOC_Os07g064404/11hydrolase, TatD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06830OsAffx.29068.1.S1_at11/118+3809681..3811100hypothetical protein
LOC_Os08g06840Os.29976.1.S1_at11/118+3812742..3813723expressed protein
LOC_Os08g06850NANA8+3817417..3821222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06860OsAffx.24469.1.S1_x_at2/118+3822410..3823973retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06870OsAffx.5727.1.S1_at7/118+3831667..3832508hypothetical protein
LOC_Os08g06880OsAffx.29070.2.S1_at10/118+3832845..3836002expressed protein
LOC_Os08g06880OsAffx.29070.2.S1_x_at10/118+3832845..3836002expressed protein
LOC_Os08g06890OsAffx.21982.1.S1_x_at11/118+3842143..3843911hypothetical protein
LOC_Os08g06900NANA8+3845652..3847833retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06910NANA8+3849211..3849896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g06920OsAffx.15664.2.S1_at11/118+3850119..3851159hypothetical protein
LOC_Os08g06930Os.57048.1.S1_at11/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06930OsAffx.16864.1.S1_at3/118+3853298..3856803transposon protein, putative, unclassified, expressed
LOC_Os08g06940Os.6416.1.A1_s_at11/118+3857733..3859597expressed protein
LOC_Os08g06940Os.54399.1.S1_at11/118+3857733..3859597expressed protein
LOC_Os08g06949NANA8+3860300..3860626NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004536molecular_functiondeoxyribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29070.2.S1_x_at--769--4791Chr08:3833380..3833404 (25 bp)
GCTCGCTGAAGGAATCTAGAGAAGT
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--1--431Chr08:3833393..3833417 (25 bp)
ATCTAGAGAAGTGCTCGAGATCGCC
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--993--1391Chr08:3833419..3833443 (25 bp)
AGACTGACGGTGAGCTCAGCTGCTT
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--888--3392Chr08:3833435..3833459 (25 bp)
CAGCTGCTTGGATGCGGGTTGTTTT
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--276--3992Chr08:3833449..3833473 (25 bp)
CGGGTTGTTTTGACTATGTTATGCT
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--827--2031Chr08:3833461..3833485 (25 bp)
ACTATGTTATGCTTGGTGCCTTCAA
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--622--531NONE
ATCGCGAAAGGCAAGTTATGTCAGG
NONE
OsAffx.29070.2.S1_x_at--975--8171Chr08:3835203..3835223 (21 bp)
GGCAAGTTATGTCAGGTAAACTCTA
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--408--7312Chr08:3835208..3835232 (25 bp)
TGTCAGGTAAACTCTAATAAGGTTA
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--277--3012Chr08:3835223..3835672 (25 bp)
AATAAGGTTATTGTTCAGCAAGTTC
LOC_Os08g06880
OsAffx.29070.2.S1_x_at--953--6791Chr08:3835229..3835678 (25 bp)
GTTATTGTTCAGCAAGTTCTTGAGG
LOC_Os08g06880
Target Sequence 
GCTCGCTGAAGGAATCTAGAGAAGTGCTCGAGATCGCCGAGACTGACGGTGAGCTCAGCTGCTTGGATGCGGGTTGTTTT
GACTATGTTATGCTTGGTGCCTTCAAGGAGTTTGAGGAGAGTGGAGATCCGGAAGGGCATTTCCAGGCGCTGCTGGCTCT
GGCGAAGGAAGGAATCGCGAAAGGCAAGTTATGTCAGGTAAACTCTAATAAGGTTATTGTTCAGCAAGTTCTTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29070.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis