Browse Element(s) Details


OsAffx.29082.1.S1_at

Description tigr:9636.m00691
TID=OsAffx.29082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0753010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07490OsAffx.16877.1.S1_at8/118+4200074..4201570expressed protein
LOC_Os08g07500Os.49673.1.S1_at11/118+4205114..4206570uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g07510NANA8+4210715..4211149hypothetical protein
LOC_Os08g07520OsAffx.16878.1.S1_at11/118+4213705..4214067hypothetical protein
LOC_Os08g07530OsAffx.29082.1.S1_at10/118+4219844..4221250hypothetical protein
LOC_Os08g07540Os.6294.1.S1_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540Os.6294.1.S1_s_at11/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07540OsAffx.16132.1.S1_at1/118+4230676..4236241hemimethylated DNA binding domain containing protein, expressed
LOC_Os08g07550Os.5300.1.S1_at9/118+4236865..4237329hAT dimerisation domain-containing protein, putative
LOC_Os08g07560Os.47130.4.A1_x_at3/118+4241850..4246651retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29082.1.S1_at--529--1651Chr08:4219979..4220003 (25 bp)
AGCGCGATTCGTCTAGCCTGTTCTT
LOC_Os08g07530
OsAffx.29082.1.S1_at--103--6731Chr08:4219998..4220022 (25 bp)
GTTCTTCTCCATTCCTGGGCGGCAG
LOC_Os08g07530
OsAffx.29082.1.S1_at--301--7851Chr08:4220027..4220051 (25 bp)
GGTAGCCGCAGTCTCAAGCACAACG
LOC_Os08g07530
OsAffx.29082.1.S1_at--386--4551Chr08:4220093..4220117 (25 bp)
GCCCTAGAAGACGAGCTGATCCAGA
LOC_Os08g07530
OsAffx.29082.1.S1_at--363--4751Chr08:4220107..4220131 (25 bp)
GCTGATCCAGAAGGAGAACTCCGGC
LOC_Os08g07530
OsAffx.29082.1.S1_at--456--7131Chr08:4220161..4220185 (25 bp)
GTCATCCTGCGACAACCACGGTGCT
LOC_Os08g07530
OsAffx.29082.1.S1_at--562--1711NONE
ACCACGGTGCTCCACAGCAAATAGA
NONE
OsAffx.29082.1.S1_at--896--1931Chr08:4221116..4221140 (25 bp)
ACGGCTGATACTAACGACGGTGATA
LOC_Os08g07530
OsAffx.29082.1.S1_at--296--5291Chr08:4221151..4221175 (25 bp)
GAATGGTCCGGCACGAGATGTACAC
LOC_Os08g07530
OsAffx.29082.1.S1_at--818--6271Chr08:4221167..4221191 (25 bp)
GATGTACACATCAAAGCTAAACTAT
LOC_Os08g07530
OsAffx.29082.1.S1_at--600--11Chr08:4221190..4221214 (25 bp)
ATTAGGGTACAATCTGGAGCCAGGA
LOC_Os08g07530
Target Sequence 
AGCGCGATTCGTCTAGCCTGTTCTTCTCCATTCCTGGGCGGCAGCAACGGTAGCCGCAGTCTCAAGCACAACGCGGCCGC
GGGCGAGAAGTCCGCCGCCGACCACGCCGCCGGAGCCCTAGAAGACGAGCTGATCCAGAAGGAGAACTCCGGCGGCGACG
CTGCCGCCGGTGCCTCTCCTCCGTCATCCTGCGACAACCACGGTGCTCCACAGCAAATAGAGGTGACGGCTGATACTAAC
GACGGTGATAAGGAGAAGACGAATGGTCCGGCACGAGATGTACACATCAAAGCTAAACTATTAGGGTACAATCTGGAGCC
AGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis