Browse Element(s) Details


OsAffx.29091.1.S1_at

Description tigr:9636.m00735
TID=OsAffx.29091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MLA1-2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0793011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07890Os.12668.1.S1_s_at11/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07890Os.51084.1.S1_x_at2/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07900NANA8+4448215..4453879retrotransposon protein, putative, LINE subclass
LOC_Os08g07910OsAffx.29089.1.S1_at11/118+4454275..4454777expressed protein
LOC_Os08g07920OsAffx.29090.1.S1_at11/118+4455805..4457912disease resistance protein RPM1 homolog, putative
LOC_Os08g07930OsAffx.29091.1.S1_at11/118+4459685..4465429NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29091.1.S1_at--458--9471Chr08:4463321..4463345 (25 bp)
TCTGATTTAGGCATCCGACATCTCT
LOC_Os08g07930
OsAffx.29091.1.S1_at--646--9671Chr08:4463352..4463376 (25 bp)
TCACCATGGCTGAGGTCATTATTGG
LOC_Os08g07930
OsAffx.29091.1.S1_at--604--9111Chr08:4463440..4463464 (25 bp)
TGCTGCTAGTTTGATCCAGTCTGCA
LOC_Os08g07930
OsAffx.29091.1.S1_at--532--1151Chr08:4463457..4463481 (25 bp)
AGTCTGCAGTTGAGACACTTCCCAA
LOC_Os08g07930
OsAffx.29091.1.S1_at--810--6691Chr08:4463489..4463513 (25 bp)
GTTCTCCGTTTTCAGTTACAGCGTG
LOC_Os08g07930
OsAffx.29091.1.S1_at--967--2151Chr08:4463506..4463530 (25 bp)
ACAGCGTGAAGCATGCATACAGTTT
LOC_Os08g07930
OsAffx.29091.1.S1_at--855--5851Chr08:4463630..4463654 (25 bp)
GAGCCACTTTACACGATATTTGAGG
LOC_Os08g07930
OsAffx.29091.1.S1_at--730--8831Chr08:4465173..4465197 (25 bp)
TGATACAACCTTTCTGCGTTCTTGA
LOC_Os08g07930
OsAffx.29091.1.S1_at--1088--3611Chr08:4465193..4465217 (25 bp)
CTTGACCCAATCCTGTGTGGTGGTA
LOC_Os08g07930
OsAffx.29091.1.S1_at--1090--4791Chr08:4465235..4465259 (25 bp)
GCTCTCCGTGCCAGGGTGGTCAAGA
LOC_Os08g07930
OsAffx.29091.1.S1_at--284--5631Chr08:4465258..4465282 (25 bp)
GACAGCGTTAAGCAATTATCCGAAG
LOC_Os08g07930
Target Sequence 
TCTGATTTAGGCATCCGACATCTCTCCAACCTCACCATGGCTGAGGTCATTATTGGTACAGATTATAGTCATGGATGCTA
TAACCCAGAGGAAGAGTTAATGAAAAGCAGCACCAATTTTGCTGCTAGTTTGATCCAGTCTGCAGTTGAGACACTTCCCA
ACCGTCCTGTTCTCCGTTTTCAGTTACAGCGTGAAGCATGCATACAGTTTGAAGAGAGGAGTGTGAATTATGAAATAGAG
GTCAATCTAGGCGAAGTAAGAGATGTTGGCAAGGTGGATCAAGGTGAAACAAGAGTTGGATCAACTAAAGAGCCACTTTA
CACGATATTTGAGGTTATAAGACGTTTTAACTTTAGTCAAAGTCAAACTGCTTTTAAGTTTGACCAAGTTTGTAGAATAA
ACATGACTGAGAAGGAAATGATACAACCTTTCTGCGTTCTTGACCCAATCCTGTGTGGTGGTAGGGACGGGAGGGGAAGG
GCTCTCCGTGCCAGGGTGGTCAAGACAGCGTTAAGCAATTATCCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis