Browse Element(s) Details


OsAffx.29121.1.S1_at

Description tigr:9636.m00921
TID=OsAffx.29121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161497 putative nodulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0967011/11N7 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29121.1.S1_at--538--3091Chr08:5578717..5578741 (25 bp)
AATAAAGAAGTTCCCTCTGCTTGAG
LOC_Os08g09670
OsAffx.29121.1.S1_at--1149--1611Chr08:5578691..5578715 (25 bp)
AGCTGGAGCTTTCACTCAGTCCAAA
LOC_Os08g09670
OsAffx.29121.1.S1_at--235--2271Chr08:5578632..5578656 (25 bp)
AAATCATGTCCACAGCTTAAGCGCT
LOC_Os08g09670
OsAffx.29121.1.S1_at--624--1551Chr08:5578619..5578643 (25 bp)
AGCTTAAGCGCTTCAGACTGAGTCA
LOC_Os08g09670
OsAffx.29121.1.S1_at--705--6511Chr08:5578510..5578534 (25 bp)
GATTTTCGGCAATACCATCACCAAT
LOC_Os08g09670
OsAffx.29121.1.S1_at--242--4411Chr08:5578430..5578454 (25 bp)
GCCACTGCTTCAATGTCTTCATGGA
LOC_Os08g09670
OsAffx.29121.1.S1_at--982--5231Chr08:5578379..5578403 (25 bp)
GAATCAAAGCACTGAGGCTCCCCGA
LOC_Os08g09670
OsAffx.29121.1.S1_at--1137--5691Chr08:5578341..5578365 (25 bp)
GACTATGACTTGCAGGTTTTCAGCC
LOC_Os08g09670
OsAffx.29121.1.S1_at--490--6811Chr08:5578326..5578350 (25 bp)
GTTTTCAGCCCTGTTTTTGCAGATT
LOC_Os08g09670
OsAffx.29121.1.S1_at--441--6231Chr08:5578278..5578302 (25 bp)
GATGACGGTTACATGGTTCCCGGCC
LOC_Os08g09670
OsAffx.29121.1.S1_at--694--3331Chr08:5578251..5578275 (25 bp)
CACTGCGTCGTGTTCTCGGAGGAGA
LOC_Os08g09670
Target Sequence 
AATAAAGAAGTTCCCTCTGCTTGAGGAGCTGGAGCTTTCACTCAGTCCAAATGTTTTTGGGACAGATGTGTTCAGGACTG
TTGGAAAATCATGTCCACAGCTTAAGCGCTTCAGACTGAGTCAACATGGCTTTCACAGTTTCGAAGACTCGCACGATGAT
GATGAAGCCCTGGGGATAGCAACTATGACTCAGCTACGCTCCCTTCAGATTTTCGGCAATACCATCACCAATGAAGGATT
GGAAGCCATCCTTGACAACTGCCCCCATCTTGAATCCCTCGACATACGCCACTGCTTCAATGTCTTCATGGATGACACCC
TGCGAGCGAAGTGCGCCAGAATCAAAGCACTGAGGCTCCCCGATGACTCAATCGATGACTATGACTTGCAGGTTTTCAGC
CCTGTTTTTGCAGATTCAGGCAATTCCTCTGATGACATGGATGACGGTTACATGGTTCCCGGCCTTCACTGCGTCGTGTT
CTCGGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis