Browse Element(s) Details


OsAffx.29126.1.S1_at

Description tigr:9636.m00954
TID=OsAffx.29126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0996011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein
LOC_Os08g09970OsAffx.16930.1.S1_at9/118+5755324..5755828hypothetical protein
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29126.1.S1_at--376--111Chr08:5748911..5748935 (25 bp)
ATATCCAACGCCTCCACGAGTTTGG
LOC_Os08g09960
OsAffx.29126.1.S1_at--571--7651Chr08:5748935..5748959 (25 bp)
GGGATGGCCAGATCTACACCCTCTG
LOC_Os08g09960
OsAffx.29126.1.S1_at--2--9591Chr08:5748968..5748992 (25 bp)
TCTTGGTCTTCACCTTGCTATGGCC
LOC_Os08g09960
OsAffx.29126.1.S1_at--904--4031Chr08:5748993..5749017 (25 bp)
CGTTGGCCACCGTGAGCTCGGAGTT
LOC_Os08g09960
OsAffx.29126.1.S1_at--1005--8911Chr08:5749005..5749029 (25 bp)
TGAGCTCGGAGTTGGATCCTGCCAT
LOC_Os08g09960
OsAffx.29126.1.S1_at--610--9891Chr08:5749033..5749057 (25 bp)
TACTATGGCGGAGGCACCGACTACT
LOC_Os08g09960
OsAffx.29126.1.S1_at--162--5711Chr08:5749051..5749075 (25 bp)
GACTACTAGATCCACGTGTCATGAT
LOC_Os08g09960
OsAffx.29126.1.S1_at--783--6311Chr08:5749076..5749100 (25 bp)
GATGAAGGCGACCACCAGCAGCGTC
LOC_Os08g09960
OsAffx.29126.1.S1_at--555--8191Chr08:5749120..5749144 (25 bp)
GGCAAGAGGATTTTTATGGCTTTCT
LOC_Os08g09960
OsAffx.29126.1.S1_at--697--851Chr08:5749135..5749159 (25 bp)
ATGGCTTTCTTTGTTGATTTCTTAC
LOC_Os08g09960
OsAffx.29126.1.S1_at--883--10851Chr08:5749187..5749211 (25 bp)
TTGGTTATCCCTTTTATGCTGAAAT
LOC_Os08g09960
Target Sequence 
ATATCCAACGCCTCCACGAGTTTGGGGATGGCCAGATCTACACCCTCTGTTGCTCCCTCTTGGTCTTCACCTTGCTATGG
CCCGTTGGCCACCGTGAGCTCGGAGTTGGATCCTGCCATCCCTACTATGGCGGAGGCACCGACTACTAGATCCACGTGTC
ATGATGATGAAGGCGACCACCAGCAGCGTCGTGGCTCCTTCCCGTGCGTGGCAAGAGGATTTTTATGGCTTTCTTTGTTG
ATTTCTTACTTGTTGATATTGGTTGTAAAAACGATATTGGTTATCCCTTTTATGCTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis