Browse Element(s) Details


OsAffx.29146.2.S1_x_at

Description tigr:9636.m01086
TID=OsAffx.29146.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1113011/11hypothetical protein
LOC_Os08g118801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11090Os.46314.2.S1_x_at1/118+6515940..6517394retrotransposon protein, putative, unclassified
LOC_Os08g11090OsAffx.32036.1.S1_at1/118+6515940..6517394retrotransposon protein, putative, unclassified
LOC_Os08g11100Os.24942.4.A1_x_at4/118+6522656..6523063hypothetical protein
LOC_Os08g11100Os.24942.4.A1_at4/118+6522656..6523063hypothetical protein
LOC_Os08g11110Os.45173.1.S1_x_at2/118+6524802..6534085retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11110OsAffx.20733.1.S1_x_at1/118+6524802..6534085retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11110OsAffx.10020.1.S1_x_at1/118+6524802..6534085retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11110Os.51869.1.S1_at1/118+6524802..6534085retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11120OsAffx.29160.1.S1_at10/118+6535274..6539382retrotransposon protein, putative, unclassified
LOC_Os08g11120OsAffx.19675.1.S1_at1/118+6535274..6539382retrotransposon protein, putative, unclassified
LOC_Os08g11120OsAffx.19675.1.S1_x_at1/118+6535274..6539382retrotransposon protein, putative, unclassified
LOC_Os08g11130OsAffx.29146.2.S1_x_at11/118+6539991..6542154hypothetical protein
LOC_Os08g11130OsAffx.29146.3.S1_s_at11/118+6539991..6542154hypothetical protein
LOC_Os08g11130OsAffx.29146.1.S1_x_at8/118+6539991..6542154hypothetical protein
LOC_Os08g11140OsAffx.29146.5.S1_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.5.S1_x_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.4.S1_s_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11150OsAffx.17598.1.S1_at2/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11150OsAffx.21249.1.S1_at1/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11160Os.10731.1.A1_a_at11/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.38764.1.S1_x_at8/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.48015.1.A1_x_at3/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.45173.1.S1_x_at2/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11170OsAffx.18229.1.S1_x_at1/118+6558535..6560215hypothetical protein
LOC_Os08g11180OsAffx.10632.1.S1_at1/118+6561142..6566902retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29146.2.S1_x_at--936--6031Chr08:6541264..6541288 (25 bp)
GAGATGCGCAGCTACATCCTAACTC
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--733--8452Chr08:6541302..6541448 (25 bp)
TGTCGAAACCGAGCGACGACAAGTC
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--119--4831Chr08:6541596..6541620 (25 bp)
GCTCTTCGGCAACCATGTGCGCAAA
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--229--8291Chr08:6541626..6541650 (25 bp)
GGCTTCACCGCTTGCCAACGGGAAG
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--221--2491Chr08:6541659..6541683 (25 bp)
AACAGCCGCTGAAACGTCTGCTTTA
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--411--9211Chr08:6541717..6541741 (25 bp)
TCCAATTTCGAGACTCGGGTGGATC
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--249--9752Chr08:6541767..6541791 (25 bp)
TAATCTCGTCTCTCCGGCCAGCAGT
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--150--1372Chr08:6541844..6541961 (25 bp)
AGAGCTTGGCAGTCTGGATTCTCGC
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--520--1791Chr08:6541975..6541999 (25 bp)
ACCGAGCGAACCATGTGGGCTCATA
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--141--1651Chr08:6541979..6542003 (25 bp)
AGCGAACCATGTGGGCTCATATTGA
LOC_Os08g11130
OsAffx.29146.2.S1_x_at--438--8671Chr08:6541988..6542012 (25 bp)
TGTGGGCTCATATTGACGGCTTCAA
LOC_Os08g11130
Target Sequence 
GAGATGCGCAGCTACATCCTAACTCCAAGCCCTGACCATGTCGAAACCGAGCGACGACAAGTCTTCGGACGAGACCCCTA
CTTCGCCTGCTGGTCGGAGCATGGGTCTCTCGACCGCTCCCGGCTCTTCGGCAACCATGTGCGCAAACCGGTGGCTTCAC
CGCTTGCCAACGGGAAGGGGAAGAAAACAGCCGCTGAAACGTCTGCTTTAGAGTATTCTCTGGCGGGGCCCCACTTCGTC
CCTTCCAATTTCGAGACTCGGGTGGATCTTATCCCCTTCGTCGAGGGGGAAAGTAATCTCGTCTCTCCGGCCAGCAGTCC
GAGCCTGTTCACCGAGCTGAATGAGTTCGACGAAGGCTGTTCTGCCATCAAGAGCTTGGCAGTCTGGATTCTCGCGGCCC
ACTGCTCGACCGAGCGAACCATGTGGGCTCATATTGACGGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29146.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis