Browse Element(s) Details


OsAffx.29170.1.S1_at

Description tigr:9636.m01279
TID=OsAffx.29170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1299011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12920NANA8+7673067..7679314transposon protein, putative, unclassified
LOC_Os08g12930OsAffx.5797.1.S1_at11/118+7680863..7681344hypothetical protein
LOC_Os08g12940NANA8+7683680..7685032transposon protein, putative, Pong sub-class
LOC_Os08g12950Os.25411.1.A1_at9/118+7685702..7686955transposon protein, putative, Pong sub-class
LOC_Os08g12960OsAffx.29173.2.S1_at11/118+7687480..7688523MATH domain containing protein
LOC_Os08g12960OsAffx.29173.1.S1_at5/118+7687480..7688523MATH domain containing protein
LOC_Os08g12970OsAffx.29168.1.S1_at11/118+7691945..7692957hypothetical protein
LOC_Os08g12980OsAffx.29169.3.S1_at11/118+7695123..7697084expressed protein
LOC_Os08g12980OsAffx.29169.1.S1_at1/118+7695123..7697084expressed protein
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified
LOC_Os08g13000OsAffx.29171.1.S1_at11/118+7711772..7712869BTB/POZ domain containing protein
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29170.1.S1_at--126--8411Chr08:7709811..7709835 (25 bp)
GGCGCCTCCGGCGAGAGAAGGTGCG
LOC_Os08g12990
OsAffx.29170.1.S1_at--134--9111Chr08:7709688..7709712 (25 bp)
TGCTGTCGCGGACTATCTTCTCCCG
LOC_Os08g12990
OsAffx.29170.1.S1_at--583--8711Chr08:7709685..7709709 (25 bp)
TGTCGCGGACTATCTTCTCCCGCGA
LOC_Os08g12990
OsAffx.29170.1.S1_at--965--9571Chr08:7709508..7709532 (25 bp)
TCTTCGCGCGGCTTCACCGGGTGTT
LOC_Os08g12990
OsAffx.29170.1.S1_at--1146--4051Chr08:7709477..7709501 (25 bp)
CGAGGTGGACGCCAGGCTACGCGAG
LOC_Os08g12990
OsAffx.29170.1.S1_at--1041--5271Chr08:7709432..7709456 (25 bp)
GAAGGGCGACTTCCTTGACGTGCTC
LOC_Os08g12990
OsAffx.29170.1.S1_at--1059--4591Chr08:7709427..7709451 (25 bp)
GCGACTTCCTTGACGTGCTCCTCGG
LOC_Os08g12990
OsAffx.29170.1.S1_at--118--1771Chr08:7709367..7709391 (25 bp)
ACCGTGACACTCTCCGCTCATTATT
LOC_Os08g12990
OsAffx.29170.1.S1_at--326--2011Chr08:7709359..7709383 (25 bp)
ACTCTCCGCTCATTATTCACGGTAA
LOC_Os08g12990
OsAffx.29170.1.S1_at--978--9291Chr08:7709355..7709379 (25 bp)
TCCGCTCATTATTCACGGTAATCCA
LOC_Os08g12990
OsAffx.29170.1.S1_at--607--3591Chr08:7709349..7709373 (25 bp)
CATTATTCACGGTAATCCAATTAAT
LOC_Os08g12990
Target Sequence 
GGCGCCTCCGGCGAGAGAAGGTGCGGGAGCTGGTGGCGCACGTCGCGAGGCTGGCGGCCGGCGAGGGGGGCAAGCCGGCG
GTGGTGGACGTGGGGCGCGTGGCGTTCGCGACGAGCCTGAACCTGCTGTCGCGGACTATCTTCTCCCGCGACCTGACGAG
CCTGGACGACCATGGCGGGTCCAAGGGGTTCCAGGAGGCGGTGGCGAGGATCATGGAGGCCGGCGGGCGGCCCAACGTGT
CCGACTTCTTCCCCGTCCTCGCCGCCGCCGACCTGCAGGGGTGGCGCCGCCGGCTGGCGCGCCTCTTCGCGCGGCTTCAC
CGGGTGTTCGACGCCGAGGTGGACGCCAGGCTACGCGAGCACGACGCCGGCGAGGCCAGGAAGGGCGACTTCCTTGACGT
GCTCCTCGGCATCGCGGCGCGGCGGGATGATGCGGCGGAGCTCGACCGTGACACTCTCCGCTCATTATTCACGGTAATCC
AATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis