Browse Element(s) Details


OsAffx.29184.2.S1_at

Description tigr:9632.m04978
TID=OsAffx.29184.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=xyloglucan endotransglycosylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5151011/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51470Os.35344.3.S1_x_at11/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470Os.35344.18.S1_x_at10/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51470OsAffx.22940.5.S1_x_at3/114+30268041..30275304Transposable element protein, putative, MuDR
LOC_Os04g51480OsAffx.26560.1.S1_at11/114+30276469..30277205expressed protein
LOC_Os04g51490OsAffx.31174.3.S1_x_at11/114+30280028..30284344hypothetical protein
LOC_Os04g51490OsAffx.31174.1.S1_at10/114+30280028..30284344hypothetical protein
LOC_Os04g51500Os.5041.1.S1_at11/114+30291436..30294793expressed protein
LOC_Os04g51510OsAffx.29184.2.S1_at11/114+30299849..30301033Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51520Os.50883.1.S1_at9/114+30301276..30304461Glycosyl hydrolases family 16 protein, expressed
LOC_Os04g51530NANA4+30307162..30310450retrotransposon protein, putative, unclassified
LOC_Os04g51540NANA4+30311074..30317228retrotransposon protein, putative, unclassified
LOC_Os04g51550NANA4+30317862..30318772retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29184.2.S1_at--866--9611Chr04:30300105..30300129 (25 bp)
TCATCGAGGGAGACTCCGCCGGCAC
LOC_Os04g51510
OsAffx.29184.2.S1_at--24--9031Chr04:30300134..30300347 (25 bp)
TGCACAATCTACACGATCTCGGAGG
LOC_Os04g51510
OsAffx.29184.2.S1_at--294--9451Chr04:30300513..30300535 (23 bp)
TCTGGAACCCCAAGCGCATCCTGAT
LOC_Os04g51510
OsAffx.29184.2.S1_at--856--2671Chr04:30300524..30300662 (25 bp)
AAGCGCATCCTGATACTGGTGGACG
LOC_Os04g51510
OsAffx.29184.2.S1_at--902--4011Chr04:30300708..30300759 (25 bp)
CGTTCCCGACCCTGTGGAGCGCGGA
LOC_Os04g51510
OsAffx.29184.2.S1_at--639--5151Chr04:30300828..30300852 (25 bp)
GCAACTACAACGTCACCTGGTGCCG
LOC_Os04g51510
OsAffx.29184.2.S1_at--1098--8091Chr04:30300892..30300916 (25 bp)
GGACTCGACGCGCTTCGACCTGGAC
LOC_Os04g51510
OsAffx.29184.2.S1_at--1026--3091Chr04:30300920..30300944 (25 bp)
AATACGCTCTCCGACCTGCAGTGGG
LOC_Os04g51510
OsAffx.29184.2.S1_at--96--5831Chr04:30300932..30300956 (25 bp)
GACCTGCAGTGGGTGCGCTCCAACT
LOC_Os04g51510
OsAffx.29184.2.S1_at--695--4751Chr04:30300948..30300972 (25 bp)
GCTCCAACTCCATGATCTACAACTA
LOC_Os04g51510
OsAffx.29184.2.S1_at--445--5791Chr04:30300977..30301001 (25 bp)
GACGACAGTGTCAGGTTCAACGCCA
LOC_Os04g51510
Target Sequence 
TCATCGAGGGAGACTCCGCCGGCACCGTCTGCACAATCTACACGATCTCGGAGGGGCCGTGGGAGATTCACGACGAGATC
GACCTGGAGTTCCTCGGCAACGTCACCGGCGAGCCATACACGCTCCACACCAACATCTTCGCCAACGGCGTCGGCGGCCG
CGAGCAGCAGTTCCGCCTCTGGTTCGACCCCACCGCCGACTACCACACCTACTCCATCGTCTGGAACCCCAAGCGCATCC
TGATACTGGTGGACGGGAAGGCGATCAGGGACTTCAAGAACAACGAGGACCAGGGCGTGCCGTTCCCGACCCTGTGGAGC
GCGGAGGACTGGGCGACGCAGGGGGGCCGGGTCAAGACCGACTGGAAGCAGGCGCCGTTCGTCACCTACTACCGCAACTA
CAACGTCACCTGGTGCCGCCCGTCCCCCGGCGTGGCGTGGTGCGGCGACGAGCCCAAGGACTCGACGCGCTTCGACCTGG
ACGCCAATACGCTCTCCGACCTGCAGTGGGTGCGCTCCAACTCCATGATCTACAACTACTGCGACGACAGTGTCAGGTTC
AACGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29184.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis