Browse Element(s) Details


OsAffx.29203.5.S1_at

Description tigr:9636.m01481
TID=OsAffx.29203.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1480011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14760Os.52921.1.S1_at11/118+8867836..88725064-coumarate-CoA ligase 1, putative, expressed
LOC_Os08g14770Os.9720.1.S1_at11/118+8873567..8881798aminotransferase class III family protein, putative, expressed
LOC_Os08g14780OsAffx.29202.1.S1_at11/118+8882972..8884610hypothetical protein
LOC_Os08g14780Os.50047.1.S1_at1/118+8882972..8884610hypothetical protein
LOC_Os08g14790OsAffx.17001.1.S1_at11/118+8889031..8889450hypothetical protein
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein
LOC_Os08g14810Os.27450.1.S1_at10/118+8897977..8902457NB-ARC domain containing protein, expressed
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein
LOC_Os08g14830OsAffx.29205.1.S1_at11/118+8916550..8920029NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29203.5.S1_at--200--5331Chr08:8894185..8894209 (25 bp)
GAAGTCCTCGGAAGAATGCCTAGTC
LOC_Os08g14800
OsAffx.29203.5.S1_at--292--591Chr08:8894170..8894194 (25 bp)
ATGCCTAGTCTTATCGTTCTCAATT
LOC_Os08g14800
OsAffx.29203.5.S1_at--555--6731Chr08:8894155..8894179 (25 bp)
GTTCTCAATTTGACTTCGGCGTCTT
LOC_Os08g14800
OsAffx.29203.5.S1_at--462--10651Chr08:8894132..8894156 (25 bp)
TTCCGCACAAAGGATCTGCCACATA
LOC_Os08g14800
OsAffx.29203.5.S1_at--1120--3951Chr08:8894086..8894110 (25 bp)
CGGAGTCTAGAGGTGTTCTGGTTCA
LOC_Os08g14800
OsAffx.29203.5.S1_at--348--3791Chr08:8894005..8894029 (25 bp)
CTCCGAAGGCTCAGGCTTTACTTGA
LOC_Os08g14800
OsAffx.29203.5.S1_at--1130--6111Chr08:8893982..8894006 (25 bp)
GAGGGCGAATGGACTTCGGCTTCAC
LOC_Os08g14800
OsAffx.29203.5.S1_at--455--8291Chr08:8893965..8893989 (25 bp)
GGCTTCACGGCAACTATTTCGGAAT
LOC_Os08g14800
OsAffx.29203.5.S1_at--976--3871Chr08:8893898..8893922 (25 bp)
CTGTCGTGACGCGACTGTTGTGGAT
LOC_Os08g14800
OsAffx.29203.5.S1_at--579--6211Chr08:8893861..8893885 (25 bp)
GAGGCTGCCATCACATCACTAGTGA
LOC_Os08g14800
OsAffx.29203.5.S1_at--934--5871Chr08:8893822..8893846 (25 bp)
GAGCCCGTACTGGAGCTCACCAGAA
LOC_Os08g14800
Target Sequence 
GAAGTCCTCGGAAGAATGCCTAGTCTTATCGTTCTCAATTTGACTTCGGCGTCTTCCGCACAAAGGATCTGCCACATAGA
CATATATGATGATGGATTTCGGAGTCTAGAGGTGTTCTGGTTCAGGTGTTTGGATGACGGGTGGCTCAGGCTACGGTTCT
GGGGTGCAGCCATGCCGCGCCTCCGAAGGCTCAGGCTTTACTTGAGGGCGAATGGACTTCGGCTTCACGGCAACTATTTC
GGAATGCGCGACTTCCGTTCCCTCACGCGAGTCCATGTCACCGTCGACTGTCGTGACGCGACTGTTGTGGATGTGGAGGA
AGCCGAGGCTGCCATCACATCACTAGTGAAGGATAACCCCAACGAGCCCGTACTGGAGCTCACCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29203.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis