Browse Element(s) Details


OsAffx.29231.1.S1_at

Description tigr:9636.m01612
TID=OsAffx.29231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=senescence-associated protein 5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1605011/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16010Os.9922.1.S1_s_at11/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16010OsAffx.29229.1.S1_at10/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16060OsAffx.17019.1.S1_at11/118+9786247..9788173hypothetical protein
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16090Os.46053.2.S1_x_at9/118+9803917..9807149transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29231.1.S1_at--689--4151Chr08:9780038..9780062 (25 bp)
CGCCGCTGCAGGTACCAATACCATT
LOC_Os08g16050
OsAffx.29231.1.S1_at--351--7851Chr08:9780028..9780052 (25 bp)
GGTACCAATACCATTCGAGCTGTTA
LOC_Os08g16050
OsAffx.29231.1.S1_at--633--10611Chr08:9780015..9780039 (25 bp)
TTCGAGCTGTTACATATTTCCCCAA
LOC_Os08g16050
OsAffx.29231.1.S1_at--945--8211Chr08:9779973..9779997 (25 bp)
GGCAATATATTATCAAACTTTACTT
LOC_Os08g16050
OsAffx.29231.1.S1_at--329--31Chr08:9779928..9779952 (25 bp)
ATTGGTAGCTGAAAGTACTTGATGC
LOC_Os08g16050
OsAffx.29231.1.S1_at--6--7031Chr08:9779914..9779938 (25 bp)
GTACTTGATGCTAATTTGTGCACAC
LOC_Os08g16050
OsAffx.29231.1.S1_at--694--10251Chr08:9779900..9779924 (25 bp)
TTTGTGCACACAATTAATTCTGTAT
LOC_Os08g16050
OsAffx.29231.1.S1_at--117--10511Chr08:9779851..9779875 (25 bp)
TTAATTAATTCTGAGCTGCATGCAT
LOC_Os08g16050
OsAffx.29231.1.S1_at--761--8911Chr08:9779840..9779864 (25 bp)
TGAGCTGCATGCATAATAGTTTTTT
LOC_Os08g16050
OsAffx.29231.1.S1_at--1029--6191Chr08:9779723..9779747 (25 bp)
GAGGCAAAGCTAATGCACACTTCTT
LOC_Os08g16050
OsAffx.29231.1.S1_at--288--9031Chr08:9779710..9779734 (25 bp)
TGCACACTTCTTTGCCTTATGATAT
LOC_Os08g16050
Target Sequence 
CGCCGCTGCAGGTACCAATACCATTCGAGCTGTTACATATTTCCCCAAATTTACTAAATTTCATTGGCAATATATTATCA
AACTTTACTTAGATAACTAATTTGATTATTATTGGTAGCTGAAAGTACTTGATGCTAATTTGTGCACACAATTAATTCTG
TATATATTTGCACAAATATTTCTGTAATTAATTAATTCTGAGCTGCATGCATAATAGTTTTTTTTTAGATAATGACATAG
ATGTTGTTAGTTGTTACAGAAGACAAATTATAAAAAAAATGAATTTAGATAACAAATTAAACTAAATTAGTTTTTGAGGC
AAAGCTAATGCACACTTCTTTGCCTTATGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis