Browse Element(s) Details


OsAffx.29274.1.S1_at

Description tigr:9636.m01893
TID=OsAffx.29274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1929011/11hypothetical protein
LOC_Os09g260801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19250OsAffx.19542.3.S1_x_at7/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.12926.1.S1_at2/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250Os.15946.1.S1_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.21754.1.S1_x_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19260NANA8+11513453..11515754hypothetical protein
LOC_Os08g19270OsAffx.17069.1.S1_at11/118+11519917..11524190hypothetical protein
LOC_Os08g19280OsAffx.22629.1.S1_at2/118+11527822..11529411hypothetical protein
LOC_Os08g19280OsAffx.13987.1.S1_at1/118+11527822..11529411hypothetical protein
LOC_Os08g19290OsAffx.29274.1.S1_at11/118+11531910..11532557hypothetical protein
LOC_Os08g19300OsAffx.20020.1.S1_x_at3/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19300OsAffx.15695.1.S1_x_at2/118+11535959..11536953retrotransposon protein, putative, unclassified
LOC_Os08g19310NANA8+11546177..11548597hypothetical protein
LOC_Os08g19320Os.14355.1.S1_at11/118+11552108..11557369Aberrant root formation protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29274.1.S1_at--490--3071Chr08:11531943..11531967 (25 bp)
AATCATGACGAACCAGATGCACCTG
LOC_Os08g19290
OsAffx.29274.1.S1_at--43--5471Chr08:11532018..11532042 (25 bp)
GAACGGTTGCTGAATGCACGCCTTC
LOC_Os08g19290
OsAffx.29274.1.S1_at--1122--3351Chr08:11532070..11532094 (25 bp)
CACCGCTTGTTGATCCCGAGGATGA
LOC_Os08g19290
OsAffx.29274.1.S1_at--1066--7491Chr08:11532098..11532122 (25 bp)
GTGGATGCACATTCGGTTGATGATG
LOC_Os08g19290
OsAffx.29274.1.S1_at--947--6291Chr08:11532119..11532143 (25 bp)
GATGATGCCGATGACAGACTCCATG
LOC_Os08g19290
OsAffx.29274.1.S1_at--215--1411Chr08:11532134..11532158 (25 bp)
AGACTCCATGGTCCGTCCAATGGTG
LOC_Os08g19290
OsAffx.29274.1.S1_at--748--6151Chr08:11532195..11532219 (25 bp)
GAGGATTTGGCTCCCGTGCGCACTT
LOC_Os08g19290
OsAffx.29274.1.S1_at--935--10811Chr08:11532219..11532243 (25 bp)
TTGGCGGTTGTTTTGAGCCCCATGA
LOC_Os08g19290
OsAffx.29274.1.S1_at--78--3111Chr08:11532308..11532327 (20 bp)
AATATGCGGCGGCATGTTCATCCTC
LOC_Os08g19290
OsAffx.29274.1.S1_at--240--4272Chr09:15690493..15690514 (22 bp)
CCTGGATAATGTTGCTCGGGTAAAG
LOC_Os09g26080
OsAffx.29274.1.S1_at--812--6111Chr08:11532490..11532514 (25 bp)
GAGTGCATAATCTTTCACATCAGAG
LOC_Os08g19290
Target Sequence 
AATCATGACGAACCAGATGCACCTGCCACATGGGCTGAGGTGTTGCAAATGGGGAATAATATTCTTCAAGTGATGGAACG
GTTGCTGAATGCACGCCTTCCGGCTGCCAGTGGTGGGGTGGTTCAGCCACCGCTTGTTGATCCCGAGGATGAGTTGTGGA
TGCACATTCGGTTGATGATGATGCCGATGACAGACTCCATGGTCCGTCCAATGGTGGAGGTACTAGAGCACGAGAAGGAG
GTGCTCACGGGCGAGGATTTGGCTCCCGTGCGCACTTTGGCGGTTGTTTTGAGCCCCATGATCATCACCATGAGGAGGAA
TATGCGGCGGCATGTTCATCCTCGCCGAGGTGCGGTCCTTGGCAATGGAGGCCACCATCGTGGTCGCCATGATCATGATG
ACCTGGATAATGTTGCTCGGGTAAAGTTGAGTGTTCCAAAGTTTACTGGAAAGGATGTTCTAGATGCTTATCTTTATTGG
GAAGAACAGTGTGATCAGATTTTTAGAGTGCATAATCTTTCACATCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis