Browse Element(s) Details


OsAffx.29302.1.S1_at

Description tigr:9635.m02518
TID=OsAffx.29302.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2619011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26150OsAffx.5446.1.S1_s_at11/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26150Os.11353.1.S1_at1/117+15031692..15035672RADIALIS, putative, expressed
LOC_Os07g26160OsAffx.18924.2.S1_x_at3/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.19842.1.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.18924.3.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26170OsAffx.16418.1.S1_at11/117+15047109..15048752Legume lectins alpha domain containing protein
LOC_Os07g26180OsAffx.28596.1.S1_at11/117+15053760..15055388lectin protein kinase family protein, putative
LOC_Os07g26190OsAffx.29302.1.S1_at11/117+15058180..15060974hypothetical protein
LOC_Os07g26200OsAffx.13101.1.S1_at7/117+15061632..15062434hypothetical protein
LOC_Os07g26210Os.27796.1.A1_at8/117+15067969..15075744hypothetical protein
LOC_Os07g26220OsAffx.20329.1.S1_at4/117+15083235..15087638retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29302.1.S1_at--1114--7651Chr07:15058500..15058524 (25 bp)
GGGATGCGAGTTGTGACATTTTTCA
LOC_Os07g26190
OsAffx.29302.1.S1_at--1114--8671Chr07:15058489..15058513 (25 bp)
TGTGACATTTTTCATCATGGTGGAC
LOC_Os07g26190
OsAffx.29302.1.S1_at--289--7531Chr07:15058470..15058494 (25 bp)
GTGGACAACAAGCAGACTTCTAAAC
LOC_Os07g26190
OsAffx.29302.1.S1_at--235--2051Chr07:15058455..15058479 (25 bp)
ACTTCTAAACCACCATCTGACATTG
LOC_Os07g26190
OsAffx.29302.1.S1_at--541--8951Chr07:15058438..15058462 (25 bp)
TGACATTGGCCCTGACAACATCATT
LOC_Os07g26190
OsAffx.29302.1.S1_at--484--8411Chr07:15058431..15058455 (25 bp)
GGCCCTGACAACATCATTCCAATAA
LOC_Os07g26190
OsAffx.29302.1.S1_at--1151--7931Chr07:15058402..15058426 (25 bp)
GGATAAGCTAACACCAGAACAGATG
LOC_Os07g26190
OsAffx.29302.1.S1_at--141--1351Chr07:15058346..15058370 (25 bp)
AGAGTCAGTGCTTACATTCATTCAA
LOC_Os07g26190
OsAffx.29302.1.S1_at--133--131Chr07:15058331..15058355 (25 bp)
ATTCATTCAAGCAAACTCGCTCAGG
LOC_Os07g26190
OsAffx.29302.1.S1_at--81--2011Chr07:15058317..15058341 (25 bp)
ACTCGCTCAGGAACGGTCATCCAAA
LOC_Os07g26190
OsAffx.29302.1.S1_at--577--1311Chr07:15058280..15058304 (25 bp)
AGATGGTTCCCAATGATGATTCGGA
LOC_Os07g26190
Target Sequence 
GGGATGCGAGTTGTGACATTTTTCATCATGGTGGACAACAAGCAGACTTCTAAACCACCATCTGACATTGGCCCTGACAA
CATCATTCCAATAACACTGGATAAGCTAACACCAGAACAGATGTTAGAGTATGAGCAGATGATGAACAACTTGAAGAGTC
AGTGCTTACATTCATTCAAGCAAACTCGCTCAGGAACGGTCATCCAAAGGTATAAACTAAAGATGGTTCCCAATGATGAT
TCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis