Browse Element(s) Details


OsAffx.2932.1.S1_s_at

Description tigr:9630.m03952
TID=OsAffx.2932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein L14, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4088011/1160 ribosomal protein L14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40840Os.53830.1.S1_at11/112+24743582..24748891GMC oxidoreductase family protein, expressed
LOC_Os02g40850Os.40855.5.S1_x_at11/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_at9/112+24756878..24759423hypothetical protein
LOC_Os02g40850Os.40360.1.S1_x_at6/112+24756878..24759423hypothetical protein
LOC_Os02g40860Os.27664.1.S1_at11/112+24760940..24766881Casein kinase I, epsilon isoform, putative, expressed
LOC_Os02g40870Os.16625.1.S1_at11/112+24767680..24769171Phosphatidylinositol N-acetylglucosaminyltransferase family protein, expressed
LOC_Os02g40880OsAffx.2932.1.S1_s_at11/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40880Os.7150.1.S1_at1/112+24771861..2477376860 ribosomal protein L14, putative, expressed
LOC_Os02g40890Os.7522.1.S1_at10/112+24774059..24776899expressed protein
LOC_Os02g40900Os.24611.1.S1_at11/112+24777346..24780675expressed protein
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.2.S1_s_at8/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.6.S1_s_at5/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930OsAffx.3425.1.S1_at1/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2932.1.S1_s_at--249--6351Chr02:24772648..24772672 (25 bp)
GATGCTCCTGACATGGTCAGGTGCC
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--824--8591Chr02:24772635..24772659 (25 bp)
TGGTCAGGTGCCAGATCAACTTCAA
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--226--6011Chr02:24772382..24772406 (25 bp)
GAGAGCGTCACTCAATGACTTTGAC
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--486--1391Chr02:24772207..24772231 (25 bp)
AGACTGCCGCGGCTTAGTAGTGCCA
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--584--4431Chr02:24772186..24772210 (25 bp)
GCCATGTTGAGTTTTTGGTTCCAAG
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--826--7951Chr02:24772159..24772183 (25 bp)
GGATCAGCAATATGTTTCAATGGTC
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--366--6831Chr02:24772146..24772170 (25 bp)
GTTTCAATGGTCTTAGAGCCAGAAT
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--319--1211Chr02:24772033..24772057 (25 bp)
AGTTTCCAACATATGATCACTGGTG
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--11--10251Chr02:24772007..24772031 (25 bp)
TTTGTGTGGACTCTACTCGTTACCA
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--288--8111Chr02:24772000..24772024 (25 bp)
GGACTCTACTCGTTACCAGTTGAGA
LOC_Os02g40880
OsAffx.2932.1.S1_s_at--661--4251Chr02:24771972..24771996 (25 bp)
CCGTGTTTTGCTCGTGCAGCATATT
LOC_Os02g40880
Target Sequence 
GATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGGCTTTCCCTGACTGACATCAAGATTGACATCAAACGTGT
CCCGAAGAAGACAACTTTGATTAAGGCTATGGAGGAGGCTGATGTTAAGAACAAGTGGGAGAATAGCTCATGGGGCAAGA
AGCTAATTGTCCAGAAGAGGAGAGCGTCACTCAATGACTTTGACAGGTTCAAGGTTATGTTGGCCAAGATCAAGAGGGGA
GGTGCTATCAGGCAAGAGCTTGCGAAGCTCAAGAAGACTGCCGCGGCTTAGTAGTGCCATGTTGAGTTTTTGGTTCCAAG
TTGGATCAGCAATATGTTTCAATGGTCTTAGAGCCAGAATTAGTACTACTGTTTAATGGAACCTATTTCATATTTAAATT
GAGCATGGTTGTGCTTTAGAGATTTTGTATGACTGATGGCTGTTAAATAGTTTCCAACATATGATCACTGGTGATTTGTG
TGGACTCTACTCGTTACCAGTTGAGATTGCCGTGTTTTGCTCGTGCAGCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2932.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis