Browse Element(s) Details


OsAffx.29333.1.S1_at

Description tigr:9636.m02431
TID=OsAffx.29333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2482011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24760Os.19048.1.S1_s_at11/118+14848609..14859237Pre-mRNA splicing factor RNA helicase, putative, expressed
LOC_Os08g24770OsAffx.29332.1.S1_at2/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24770OsAffx.10096.1.S1_x_at1/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24780OsAffx.13811.1.S1_at1/118+14870386..14873620Protein kinase domain containing protein
LOC_Os08g24790Os.15250.1.S1_at11/118+14875922..14876851membrane protein, putative, expressed
LOC_Os08g24800OsAffx.17134.1.S1_at10/118+14878319..14879689hypothetical protein
LOC_Os08g24810OsAffx.17135.1.S1_at11/118+14881776..14883404hypothetical protein
LOC_Os08g24820OsAffx.29333.1.S1_at11/118+14884090..14884524hypothetical protein
LOC_Os08g24830OsAffx.29334.1.S1_at11/118+14887061..14888317F-box domain containing protein
LOC_Os08g24840OsAffx.29335.1.S1_at10/118+14893742..14894269hypothetical protein
LOC_Os08g24850Os.45721.1.S1_s_at8/118+14898741..14899461hypothetical protein
LOC_Os08g24850Os.45721.1.S1_x_at1/118+14898741..14899461hypothetical protein
LOC_Os08g24850OsAffx.25377.2.S1_x_at1/118+14898741..14899461hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29333.1.S1_at--536--1451Chr08:14884457..14884481 (25 bp)
AGAAGCTAGCGTCCTTCTGTCTTCA
LOC_Os08g24820
OsAffx.29333.1.S1_at--1082--7131Chr08:14884439..14884463 (25 bp)
GTCTTCACCTTGAGGCGATGGCGGA
LOC_Os08g24820
OsAffx.29333.1.S1_at--883--7371Chr08:14884409..14884433 (25 bp)
GTGACGAGATCGATCAGGCCGACGA
LOC_Os08g24820
OsAffx.29333.1.S1_at--480--5411Chr08:14884384..14884408 (25 bp)
GAAGCTGGCAACCTTTTGCCTTCAT
LOC_Os08g24820
OsAffx.29333.1.S1_at--826--431Chr08:14884361..14884385 (25 bp)
ATCTTCAGGCCATGGCTGGTACTAG
LOC_Os08g24820
OsAffx.29333.1.S1_at--705--8591Chr08:14884345..14884369 (25 bp)
TGGTACTAGTGGAGACGACGAGATC
LOC_Os08g24820
OsAffx.29333.1.S1_at--801--4751Chr08:14884314..14884338 (25 bp)
GCTGACGAGAGCTTGGCGGCCTTCT
LOC_Os08g24820
OsAffx.29333.1.S1_at--411--8931Chr08:14884285..14884309 (25 bp)
TGACCTTGAGGCCATGGCCAGCGAA
LOC_Os08g24820
OsAffx.29333.1.S1_at--997--5431Chr08:14884249..14884273 (25 bp)
GAACGCCGTGGCTAGCAACGCCAAC
LOC_Os08g24820
OsAffx.29333.1.S1_at--277--1131Chr08:14884195..14884219 (25 bp)
AGTCGACGAGACCAAGTGCAAGGCT
LOC_Os08g24820
OsAffx.29333.1.S1_at--1089--8331Chr08:14884138..14884162 (25 bp)
GGCTGGCATGGCGATGATCCATCAT
LOC_Os08g24820
Target Sequence 
AGAAGCTAGCGTCCTTCTGTCTTCACCTTGAGGCGATGGCGGAAGCTGGTGACGAGATCGATCAGGCCGACGAGAAGCTG
GCAACCTTTTGCCTTCATCTTCAGGCCATGGCTGGTACTAGTGGAGACGACGAGATCGAGCAGGCTGACGAGAGCTTGGC
GGCCTTCTGCCTTGACCTTGAGGCCATGGCCAGCGAAGCGGCAGCGGCGAACGCCGTGGCTAGCAACGCCAACGACGACG
ACATGGCGGCAGCAGCAGCAGCAGTCGACGAGACCAAGTGCAAGGCTGCTGCTGCGCTATCGACGGCCTGCTGCGAGGCG
GCTGGCATGGCGATGATCCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis