Browse Element(s) Details


OsAffx.29384.3.S1_x_at

Description tigr:9635.m03939
TID=OsAffx.29384.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3950010/11hypothetical protein
LOC_Os08g277595/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed
LOC_Os07g39530Os.54251.1.S1_at2/117+23683704..23686151NPH3 family protein, expressed
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29384.3.S1_x_at--506--10831Chr07:23667396..23667420 (25 bp)
TTGTGTCCTGCCACTGGCAATTATG
LOC_Os07g39500
OsAffx.29384.3.S1_x_at--319--7331Chr07:23667357..23667381 (25 bp)
GTGCATTCTTTGGTTGATGTCCAGA
LOC_Os07g39500
OsAffx.29384.3.S1_x_at--512--9631Chr07:23667268..23667292 (25 bp)
TCATGGATTCTCTACTAAGCAACGA
LOC_Os07g39500
OsAffx.29384.3.S1_x_at--806--5152Chr08:16781226..16781250 (25 bp)
GCAACGAGATTCCATTTTTCAGATT
LOC_Os08g27759
OsAffx.29384.3.S1_x_at--805--9291NONE
TCCCCTTGCTTGTTATTGCTTACAT
NONE
OsAffx.29384.3.S1_x_at--54--9072Chr08:16780821..16780844 (24 bp)
TGCATCTCCGCATCATTGACTACAG
LOC_Os08g27759
OsAffx.29384.3.S1_x_at--442--992Chr08:16780731..16780755 (25 bp)
AGGATGAACCTTGGCTATGTCACAT
LOC_Os08g27759
OsAffx.29384.3.S1_x_at--750--10112Chr08:16780717..16780740 (24 bp)
TATGTCACATATGGGTCTCGCCCGT
LOC_Os08g27759
OsAffx.29384.3.S1_x_at--861--5272Chr08:16780591..16780615 (25 bp)
GAATGAGATCCCATATCTAGCCCAA
LOC_Os08g27759
OsAffx.29384.3.S1_x_at--1043--3711Chr07:23666597..23666621 (25 bp)
CTAGCCCAAGTTCATGTTGTTGCTG
LOC_Os07g39500
OsAffx.29384.3.S1_x_at--1022--6271Chr07:23666531..23666555 (25 bp)
GATGTTCCAATTGGTGCTGGTCAAG
LOC_Os07g39500
Target Sequence 
TTGTGTCCTGCCACTGGCAATTATGTGAATCTCGACTATGTGCATTCTTTGGTTGATGTCCAGATGTGGAGTCAGTATGA
TTGGTGCACATATGTGGCGAGCTGTTTGATGCGGGAAATCAAGAAATATCATGGATTCTCTACTAAGCAACGAGATTCCA
TTTTTCAGATTGGAGAGTGCCTCCCCTTGCTTGTTATTGCTTACATGGATCATTTGCAAATGCCAACAACTGGACTGCAT
CTCCGCATCATTGACTACAGCACACCAAGATTTTGTCATGTCACTGATGAGGACTTTGAGTATATTGTTGTTGTAGACCG
TTGTAGGATGAACCTTGGCTATGTCACATATGGGTCTCGCCCGTTCCGTCCACAGAATGAGATCCCATATCTAGCCCAAG
TTCATGTTGTTGCTGGTGGGTCTGAGGCTGAGAATGCTAGGGTTGCAAGGGCTGAAGATGTTCCAATTGGTGCTGGTCAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29384.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis