Browse Element(s) Details


OsAffx.29433.1.S1_at

Description tigr:9636.m03029
TID=OsAffx.29433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3038011/11hypothetical protein
LOC_Os04g074501/11retrotransposon protein, putative, unclassified
LOC_Os06g298601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30330NANA8+18532717..18537091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30340Os.35288.1.S1_at11/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.23126.1.S1_at3/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340OsAffx.22776.2.S1_at2/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.38043.1.S1_x_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30340Os.532.1.S1_s_at1/118+18543159..18545619protein tyrosine phosphatase, putative, expressed
LOC_Os08g30350NANA8+18547307..18548754hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_x_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.4.S1_at11/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30360OsAffx.30226.1.S1_x_at1/118+18549181..18549816hypothetical protein
LOC_Os08g30370OsAffx.17239.1.S1_at11/118+18551523..18553336hypothetical protein
LOC_Os08g30370Os.52363.1.S1_x_at6/118+18551523..18553336hypothetical protein
LOC_Os08g30380OsAffx.29433.1.S1_at11/118+18560460..18561182hypothetical protein
LOC_Os08g30390NANA8+18562307..18562808NA
LOC_Os08g30400NANA8+18565111..18569450Transposable element protein, putative, Retrotrans_gag
LOC_Os08g30410OsAffx.29434.1.S1_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.29434.1.S1_x_at11/118+18574343..18574756hypothetical protein
LOC_Os08g30410OsAffx.15821.2.S1_at1/118+18574343..18574756hypothetical protein
LOC_Os08g30420NANA8+18584109..18584325hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29433.1.S1_at--269--9291Chr08:18560629..18560653 (25 bp)
TCCGCAACTGCGAGCTCAAGATAAC
LOC_Os08g30380
OsAffx.29433.1.S1_at--638--2551Chr08:18560634..18560658 (25 bp)
AACTGCGAGCTCAAGATAACGACCT
LOC_Os08g30380
OsAffx.29433.1.S1_at--342--9211Chr08:18560850..18560874 (25 bp)
TCCAATCCCAACGAGATCGAGAACT
LOC_Os08g30380
OsAffx.29433.1.S1_at--690--4051Chr08:18560861..18560885 (25 bp)
CGAGATCGAGAACTACAAATGGTAC
LOC_Os08g30380
OsAffx.29433.1.S1_at--1125--2291Chr08:18560877..18560901 (25 bp)
AAATGGTACAGCACAACTCCCAGGT
LOC_Os08g30380
OsAffx.29433.1.S1_at--16--7031Chr08:18560882..18560906 (25 bp)
GTACAGCACAACTCCCAGGTGGTGG
LOC_Os08g30380
OsAffx.29433.1.S1_at--477--2211Chr08:18560889..18560913 (25 bp)
ACAACTCCCAGGTGGTGGGCACCGT
LOC_Os08g30380
OsAffx.29433.1.S1_at--470--8571Chr08:18560937..18560961 (25 bp)
TGGTCGGAACGCTCAACCGCGGGCT
LOC_Os08g30380
OsAffx.29433.1.S1_at--1086--2911Chr08:18561045..18561069 (25 bp)
AAGGAGATGGCATTCTACGGCGACG
LOC_Os08g30380
OsAffx.29433.1.S1_at--307--4691Chr08:18561112..18561136 (25 bp)
GCGGCAGCGCTATTGACAGTCGTTA
LOC_Os08g30380
OsAffx.29433.1.S1_at--64--41316Chr12:14661040..14661059 (20 bp)
CGCTATTGACAGTCGTTATCGATCA
NONE
Target Sequence 
TCCGCAACTGCGAGCTCAAGATAACGACCTGGGCCATCGGCGTCGCGGTCTACACCGTGCGGGACACCAAGGTCAAGTGC
AGCCGCCTGGAGACCCACACGAACCGCGAGACCATCGTGCTCACTCTCCTCTGCACCCTCGTCTCCCTCCTCGCCGGCAT
CTGGCTGAGCGACCACAGCAACGAGCTAGGCGTCATCCCCTACTTCCGCAAGAAGGACTTCTCCAATCCCAACGAGATCG
AGAACTACAAATGGTACAGCACAACTCCCAGGTGGTGGGCACCGTGGCAGGGGCCGGGGTGGTGGGGCTGGTCGGAACGC
TCAACCGCGGGCTCCGACGACGAGGACGACCACTCCGGTGCCATCGCCACCGCGTGCGCCAAGAAGGCACCGCCCTCCAT
CGCCGTCAGGCTCGAGAAGGAGATGGCATTCTACGGCGACGGCGGTGGTACTGAGGGCGGGGATGTGGCCAGCGCAGGAC
CCCGCGGCAGCGCTATTGACAGTCGTTATCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis