Browse Element(s) Details


OsAffx.29449.1.S1_x_at

Description tigr:9636.m03120
TID=OsAffx.29449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to global transcription factor group C 102
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3124011/11metallopeptidase family M24 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31200Os.47907.1.S1_at1/118+19159979..19162067UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g31210OsAffx.17264.1.S1_s_at11/118+19166286..19168841hAT family dimerisation domain containing protein
LOC_Os08g31219Os.8363.1.S1_at11/118+19171897..1917299250S ribosomal protein L27, putative, expressed
LOC_Os08g31228Os.8363.1.S1_at11/118+19174559..1917812150S ribosomal protein L27, putative, expressed
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed
LOC_Os08g31260OsAffx.17265.1.S1_at11/118+19202150..19202425hypothetical protein
LOC_Os08g31270OsAffx.17266.1.S1_at11/118+19204523..19205986F-box domain containing protein
LOC_Os08g31280OsAffx.17267.1.S1_at11/118+19207630..19208490C1-like domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29449.1.S1_x_at--241--8451Chr08:19184657..19184681 (25 bp)
GGCCACCCTGGAGAACGACATGTTC
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--671--2111Chr08:19184674..19184698 (25 bp)
ACATGTTCGAGGTCAGCGCGTTCGC
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--997--1911Chr08:19184964..19184988 (25 bp)
ACGGCGAACCCGTGTACCTGCACAT
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--1144--2071Chr08:19184985..19185009 (25 bp)
ACATCGCGTGCGTCAAGGACGGACA
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--182--1291Chr08:19185043..19185067 (25 bp)
AGATCGTGCTGGTGAGCTCGTCGCC
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--798--3911Chr08:19185122..19185146 (25 bp)
CGGGTTCGAGAGGTTTTGCAAGATT
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--933--10251Chr08:19185136..19185160 (25 bp)
TTTGCAAGATTGTTAACGTCGTCGT
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--145--8791Chr08:19185146..19185170 (25 bp)
TGTTAACGTCGTCGTGAGCGTCATC
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--479--5891Chr08:19185161..19185185 (25 bp)
GAGCGTCATCATCGCGGTCATATTC
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--454--531Chr08:19185171..19185195 (25 bp)
ATCGCGGTCATATTCGGGAGTCCCA
LOC_Os08g31240
OsAffx.29449.1.S1_x_at--134--3991Chr08:19185185..19185209 (25 bp)
CGGGAGTCCCATGGCGATGATAAGC
LOC_Os08g31240
Target Sequence 
GGCCACCCTGGAGAACGACATGTTCGAGGTCAGCGCGTTCGCGTTCCTCGCCGAGCCGCCGGCGGCGCCCGCCGCCGCGG
GCGGCAGGATCTGCGACGCCTGCGGCGACGGCGTGCGCGGCTTCGTCTACCACTCCGACGACCCCCGACCTCGACCTCCA
CCCATGCTGCGCGTTCCTGCGCAGGCGCGTCGTGGTGCAGGACGGCCGCCACTTCGAGCTCCGCAAGCGCGCGCAGCCGC
GCCGGCCTGTGCGGCGAGAGGAGCGGCCGCCGCCGCAACTTCTGGGCGTACCGGACCTACGACGACGACGGCGAACCCGT
GTACCTGCACATCGCGTGCGTCAAGGACGGACACCGCGGGCGGTGCGCGGCGGCGGTGTGGCGGCGAGATCGTGCTGGTG
AGCTCGTCGCCGGCGATGGACGGCGTGCTGCAGAGCGTGCCCCGGAGGAGGACGCCGCGGAGCGGCGGGTTCGAGAGGTT
TTGCAAGATTGTTAACGTCGTCGTGAGCGTCATCATCGCGGTCATATTCGGGAGTCCCATGGCGATGATAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29449.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis