Browse Element(s) Details


OsAffx.29450.1.S1_at

Description tigr:9636.m03125
TID=OsAffx.29450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3129011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31260OsAffx.17265.1.S1_at11/118+19202150..19202425hypothetical protein
LOC_Os08g31270OsAffx.17266.1.S1_at11/118+19204523..19205986F-box domain containing protein
LOC_Os08g31280OsAffx.17267.1.S1_at11/118+19207630..19208490C1-like domain containing protein
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein
LOC_Os08g31300OsAffx.29451.1.S1_at11/118+19231800..19232104hypothetical protein
LOC_Os08g31310OsAffx.17268.1.S1_at10/118+19236505..19237441AC transposase, putative
LOC_Os08g31310Os.51987.1.S1_s_at2/118+19236505..19237441AC transposase, putative
LOC_Os08g31320NANA8+19238770..19240649hypothetical protein
LOC_Os08g31330OsAffx.29452.1.S1_at10/118+19241065..19243305hypothetical protein
LOC_Os08g31340Os.55527.1.S1_at10/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31340Os.49537.1.S1_x_at1/118+19250110..19253732heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29450.1.S1_at--1149--951Chr08:19227472..19227496 (25 bp)
AGGAGATGTTGGCAGCCGTGGAGGA
LOC_Os08g31290
OsAffx.29450.1.S1_at--83--6171Chr08:19227449..19227473 (25 bp)
GAGGATAGATGCAGTGGCGGCGAGC
LOC_Os08g31290
OsAffx.29450.1.S1_at--773--5051Chr08:19227371..19227395 (25 bp)
GCAGCAGCGAGGCTTTTCACCGAGA
LOC_Os08g31290
OsAffx.29450.1.S1_at--306--7651Chr08:19227322..19227346 (25 bp)
GGGAGATGTCAGAGGCAGCAATATT
LOC_Os08g31290
OsAffx.29450.1.S1_at--1089--9631Chr08:19227314..19227338 (25 bp)
TCAGAGGCAGCAATATTCGTCGGTG
LOC_Os08g31290
OsAffx.29450.1.S1_at--657--931Chr08:19227310..19227334 (25 bp)
AGGCAGCAATATTCGTCGGTGGTGA
LOC_Os08g31290
OsAffx.29450.1.S1_at--136--91Chr08:19227300..19227324 (25 bp)
ATTCGTCGGTGGTGACGACTGTGCT
LOC_Os08g31290
OsAffx.29450.1.S1_at--294--7771Chr08:19227290..19227314 (25 bp)
GGTGACGACTGTGCTAAGGCGATCT
LOC_Os08g31290
OsAffx.29450.1.S1_at--451--5791Chr08:19227287..19227311 (25 bp)
GACGACTGTGCTAAGGCGATCTACA
LOC_Os08g31290
OsAffx.29450.1.S1_at--802--4091Chr08:19227285..19227309 (25 bp)
CGACTGTGCTAAGGCGATCTACAAC
LOC_Os08g31290
OsAffx.29450.1.S1_at--701--8371Chr08:19227273..19227297 (25 bp)
GGCGATCTACAACGATAGGATTAGG
LOC_Os08g31290
Target Sequence 
AGGAGATGTTGGCAGCCGTGGAGGAGGATAGATGCAGTGGCGGCGAGCTTGCGAAGGAGGAAGCGGCGACGATGAGGGCA
AGTTTGCGGAGGAGGAAGTTGGCAGCAGCGAGGCTTTTCACCGAGAGTGGAGAGGCGCCGATGAGGAGAGGGGAGATGTC
AGAGGCAGCAATATTCGTCGGTGGTGACGACTGTGCTAAGGCGATCTACAACGATAGGATTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis