Browse Element(s) Details


OsAffx.29452.1.S1_at

Description tigr:9636.m03129
TID=OsAffx.29452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3133010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31290OsAffx.29450.1.S1_at11/118+19227240..19227527hypothetical protein
LOC_Os08g31300OsAffx.29451.1.S1_at11/118+19231800..19232104hypothetical protein
LOC_Os08g31310OsAffx.17268.1.S1_at10/118+19236505..19237441AC transposase, putative
LOC_Os08g31310Os.51987.1.S1_s_at2/118+19236505..19237441AC transposase, putative
LOC_Os08g31320NANA8+19238770..19240649hypothetical protein
LOC_Os08g31330OsAffx.29452.1.S1_at10/118+19241065..19243305hypothetical protein
LOC_Os08g31340Os.55527.1.S1_at10/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31340Os.49537.1.S1_x_at1/118+19250110..19253732heavy metal-associated domain containing protein, expressed
LOC_Os08g31350OsAffx.27704.1.S1_at2/118+19256571..19260199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31350Os.43636.1.S1_at1/118+19256571..19260199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31360NANA8+19262334..19262678hypothetical protein
LOC_Os08g31370OsAffx.8372.1.S1_at4/118+19263588..19266947transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g31370OsAffx.8371.1.S1_at3/118+19263588..19266947transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29452.1.S1_at--875--4311Chr08:19242812..19242836 (25 bp)
CCTTGGAGAGAAGGTCGCGGTCCCA
LOC_Os08g31330
OsAffx.29452.1.S1_at--91--8371NONE
GGCGGTGGCCACTGATACTGCAAGA
NONE
OsAffx.29452.1.S1_at--997--3411Chr08:19242076..19242100 (25 bp)
CAGAAAATCTCTGGCCTCATGGGAG
LOC_Os08g31330
OsAffx.29452.1.S1_at--773--951Chr08:19241807..19241831 (25 bp)
AGGACTGGAACCACAGCTCTATTCT
LOC_Os08g31330
OsAffx.29452.1.S1_at--1065--4811Chr08:19241792..19241816 (25 bp)
GCTCTATTCTGGACTGACCTGTGGA
LOC_Os08g31330
OsAffx.29452.1.S1_at--1131--752Chr04:15982382..15982402 (21 bp)
ATGTCAGCAGTATCAGCACCTCTAT
NONE
OsAffx.29452.1.S1_at--466--5091Chr08:19241739..19241763 (25 bp)
GCACCTCTATGCATCATTCCTATAT
LOC_Os08g31330
OsAffx.29452.1.S1_at--410--8831Chr08:19241709..19241733 (25 bp)
TGATTCAGTACAGGCCATGTGTGCA
LOC_Os08g31330
OsAffx.29452.1.S1_at--26--8031Chr08:19241676..19241700 (25 bp)
GGAGGATTCTTTCATGCCACCATTT
LOC_Os08g31330
OsAffx.29452.1.S1_at--825--1971Chr08:19241615..19241639 (25 bp)
ACTGAACTGGCACATCTTAACCTAC
LOC_Os08g31330
OsAffx.29452.1.S1_at--132--6951Chr08:19241554..19241578 (25 bp)
GTAGCAGTTGTTATACTCCTAAAAG
LOC_Os08g31330
Target Sequence 
CCTTGGAGAGAAGGTCGCGGTCCCAGCCATGGCGGTGGCCACTGATACTGCAAGAAAGAATTGCCTTTGGAGAGGAAATA
ACTTTGGATCAACCAGAAAATCTCTGGCCTCATGGGAGAAGAGGTATTGCCAAATGTAACATAAGGACTGGAACCACAGC
TCTATTCTGGACTGACCTGTGGAATGATCAATTCAAATGTCAGCAGTATCAGCACCTCTATGCATCATTCCTATATAAAA
ATGATTCAGTACAGGCCATGTGTGCAAGACCATTGGAGGATTCTTTCATGCCACCATTTTCTTATCAGGCTTATTGTGAA
TATTTTCATCTTCAAACTGAACTGGCACATCTTAACCTACAGCAAGGAACTGGTGATTCATGGAGTTTCATTTGGAGTAG
CAGTTGTTATACTCCTAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis