Browse Element(s) Details


OsAffx.29480.2.S1_at

Description tigr:9636.m03303
TID=OsAffx.29480.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3300011/11hypothetical protein
LOC_Os01g592301/11retrotransposon protein, putative, unclassified
LOC_Os04g282201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os08g32970Os.11277.1.S1_s_at11/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.11277.1.S1_at9/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32970Os.13008.2.S1_at1/118+20326856..20328653Annexin family protein, expressed
LOC_Os08g32980Os.15822.1.S1_s_at11/118+20328910..20332352expressed protein
LOC_Os08g32980Os.53996.1.S1_at11/118+20328910..20332352expressed protein
LOC_Os08g32990OsAffx.29480.1.S1_s_at11/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g32990OsAffx.29480.3.S1_at10/118+20336123..20339148RNA polymerases K/14 to 18 kDa subunit family protein
LOC_Os08g33000OsAffx.29480.2.S1_at11/118+20340751..20346111hypothetical protein
LOC_Os08g33000Os.52575.1.S1_x_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33000OsAffx.29326.1.S1_at1/118+20340751..20346111hypothetical protein
LOC_Os08g33010OsAffx.29481.1.S1_at11/118+20347250..20348684F-box domain containing protein
LOC_Os08g33020OsAffx.17306.1.S1_x_at11/118+20349503..20350613hypothetical protein
LOC_Os08g33020OsAffx.27171.1.S1_at2/118+20349503..20350613hypothetical protein
LOC_Os08g33030OsAffx.29482.3.S1_x_at11/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.29482.5.S1_x_at4/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_at1/118+20357917..20360021hypothetical protein
LOC_Os08g33030OsAffx.22046.3.S1_x_at1/118+20357917..20360021hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29480.2.S1_at--617--2991Chr08:20342632..20342656 (25 bp)
AATGATCAACTCAAGTCCGGGTGCA
LOC_Os08g33000
OsAffx.29480.2.S1_at--755--9271Chr08:20342647..20342671 (25 bp)
TCCGGGTGCATGGAGATTCGCGCAT
LOC_Os08g33000
OsAffx.29480.2.S1_at--266--8051Chr08:20342658..20342682 (25 bp)
GGAGATTCGCGCATGGTACAAATTC
LOC_Os08g33000
OsAffx.29480.2.S1_at--1034--7831Chr08:20342672..20342696 (25 bp)
GGTACAAATTCAGGTTGGCGTGTCA
LOC_Os08g33000
OsAffx.29480.2.S1_at--554--87321Chr12:18578431..18578451 (21 bp)
TGTCATATTCGCCAAGGTGGAGTTT
NONE
OsAffx.29480.2.S1_at--473--10031Chr08:20343767..20343787 (21 bp)
TAGACTATGTGTACTCTCTCAACCG
LOC_Os08g33000
OsAffx.29480.2.S1_at--386--9511Chr08:20343779..20343803 (25 bp)
TCTCAACCGCTCAAGGCAGTAGCAA
LOC_Os08g33000
OsAffx.29480.2.S1_at--131--2771Chr08:20343819..20343843 (25 bp)
AAGACCAGCGATTGCCAGATTGGCC
LOC_Os08g33000
OsAffx.29480.2.S1_at--716--1251Chr08:20343835..20343859 (25 bp)
AGATTGGCCTCACTATGGACCAGAT
LOC_Os08g33000
OsAffx.29480.2.S1_at--942--5831Chr08:20343852..20343876 (25 bp)
GACCAGATCCGGTTTCTTCTAAGAG
LOC_Os08g33000
OsAffx.29480.2.S1_at--367--951Chr08:20343875..20343899 (25 bp)
AGGAACTTTCTCTGCGACTGTAGAC
LOC_Os08g33000
Target Sequence 
AATGATCAACTCAAGTCCGGGTGCATGGAGATTCGCGCATGGTACAAATTCAGGTTGGCGTGTCATATTCGCCAAGGTGG
AGTTTGTTAGAGTTTGTGTCGAATATGTATTCGTAGTCGGTTACAGTTTAGGACTTGGAGTTGTAATAGGTATTAGGAGT
AGACTATGTGTACTCTCTCAACCGCTCAAGGCAGTAGCAAAAGGAGCAAGCGTGGAAGACCAGCGATTGCCAGATTGGCC
TCACTATGGACCAGATCCGGTTTCTTCTAAGAGGAACTTTCTCTGCGACTGTAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29480.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis