Browse Element(s) Details


OsAffx.29509.1.S1_at

Description tigr:9636.m03473
TID=OsAffx.29509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g346108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34580Os.6139.2.S1_s_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34580Os.6139.1.S1_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34590Os.45976.1.S1_at5/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34590Os.45976.1.S1_x_at3/118+21601775..21604993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34600Os.46306.1.S1_x_at6/118+21607586..21610911transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g34610OsAffx.29509.1.S1_at8/118+21615253..21617175hypothetical protein
LOC_Os08g34620OsAffx.6022.1.S1_at11/118+21622638..21623560hypothetical protein
LOC_Os08g34640Os.50267.1.S1_at11/118+21623684..21629276Leucine Rich Repeat family protein, expressed
LOC_Os08g34630OsAffx.29510.1.S1_at11/118+21629199..21630666hypothetical protein
LOC_Os08g34650Os.54177.1.S1_s_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650OsAffx.29511.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34650Os.18569.1.S1_at11/118+21632495..21637793Leucine Rich Repeat family protein, expressed
LOC_Os08g34660OsAffx.17332.1.S1_at11/118+21639890..21640731hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29509.1.S1_at--884--2951Chr08:21617121..21617145 (25 bp)
AATGGCCCTACACCTCTTCGATGGT
LOC_Os08g34610
OsAffx.29509.1.S1_at--28--4311Chr08:21617115..21617139 (25 bp)
CCTACACCTCTTCGATGGTACATGA
LOC_Os08g34610
OsAffx.29509.1.S1_at--825--1751Chr08:21617110..21617134 (25 bp)
ACCTCTTCGATGGTACATGAATGGT
LOC_Os08g34610
OsAffx.29509.1.S1_at--483--5291Chr08:21617078..21617108 (25 bp)
GAAGGCAAGCGCCAAAGCAGTGCAT
LOC_Os08g34610
OsAffx.29509.1.S1_at--720--4551NONE
GCGCCAAAGCAGTGCATTTACAATA
NONE
OsAffx.29509.1.S1_at--60--2251NONE
AAATTATATATATCCGACTTGAGAG
NONE
OsAffx.29509.1.S1_at--665--231NONE
ATATCCGACTTGAGAGAAATCCGCT
NONE
OsAffx.29509.1.S1_at--1036--2252Chr08:21615442..21615466 (25 bp)
AAATCCGCTCGAGAGAATTCTGCAA
LOC_Os08g34610
OsAffx.29509.1.S1_at--1099--5991Chr08:21615432..21615456 (25 bp)
GAGAGAATTCTGCAAGCGCTTGAGC
LOC_Os08g34610
OsAffx.29509.1.S1_at--669--5151Chr08:21615421..21615445 (25 bp)
GCAAGCGCTTGAGCCGAACTCGGTG
LOC_Os08g34610
OsAffx.29509.1.S1_at--703--3611Chr08:21615414..21615438 (25 bp)
CTTGAGCCGAACTCGGTGCCATCGG
LOC_Os08g34610
Target Sequence 
AATGGCCCTACACCTCTTCGATGGTACATGAATGGTGGAAGGCAAGCGCCAAAGCAGTGCATTTACAATATAAGTCTCAA
AATTATATATATCCGACTTGAGAGAAATCCGCTCGAGAGAATTCTGCAAGCGCTTGAGCCGAACTCGGTGCCATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis