Browse Element(s) Details


OsAffx.29563.1.S1_at

Description tigr:9636.m03681
TID=OsAffx.29563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36620OsAffx.22848.3.S1_x_at3/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_at2/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_x_at1/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36630Os.18654.1.S1_x_at11/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36630Os.18654.2.S1_at10/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36640OsAffx.29563.1.S1_at11/118+22993581..22993838hypothetical protein
LOC_Os08g36650OsAffx.10905.2.S1_at7/118+22996618..22998928retrotransposon protein, putative, unclassified
LOC_Os08g36660OsAffx.29564.1.S1_at11/118+23000788..23003041expressed protein
LOC_Os08g36670OsAffx.22940.3.S1_at10/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.3.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.1.S1_s_at6/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.3.S1_x_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.2.S1_s_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.18.S1_x_at3/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_at2/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.31552.2.S1_at1/118+23004725..23011995hypothetical protein
LOC_Os08g36680OsAffx.17361.1.S1_at10/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36680OsAffx.27787.1.S1_at1/118+23014508..23018476Eukaryotic-type carbonic anhydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29563.1.S1_at--999--7271Chr08:22993782..22993806 (25 bp)
GTGCCTACTCTTCCCTCGTGCTTGG
LOC_Os08g36640
OsAffx.29563.1.S1_at--916--4411Chr08:22993755..22993779 (25 bp)
GCCATGTGACGCAAGGGCCAACATG
LOC_Os08g36640
OsAffx.29563.1.S1_at--797--2811Chr08:22993743..22993767 (25 bp)
AAGGGCCAACATGCCAGGGAACTTG
LOC_Os08g36640
OsAffx.29563.1.S1_at--1110--2491Chr08:22993736..22993760 (25 bp)
AACATGCCAGGGAACTTGACTCGGA
LOC_Os08g36640
OsAffx.29563.1.S1_at--10--4411Chr08:22993731..22993755 (25 bp)
GCCAGGGAACTTGACTCGGATCAGA
LOC_Os08g36640
OsAffx.29563.1.S1_at--1148--2051Chr08:22993723..22993747 (25 bp)
ACTTGACTCGGATCAGAGTGGTGGT
LOC_Os08g36640
OsAffx.29563.1.S1_at--1024--3391Chr08:22993710..22993734 (25 bp)
CAGAGTGGTGGTGGATAACGACCAA
LOC_Os08g36640
OsAffx.29563.1.S1_at--487--6211Chr08:22993676..22993700 (25 bp)
GAGGCTGGTTGGTTTGACGATGCCA
LOC_Os08g36640
OsAffx.29563.1.S1_at--1050--3171Chr08:22993646..22993670 (25 bp)
CAATACGACATTGGCGCGCTAGAAG
LOC_Os08g36640
OsAffx.29563.1.S1_at--634--2071Chr08:22993639..22993663 (25 bp)
ACATTGGCGCGCTAGAAGCGATGGA
LOC_Os08g36640
OsAffx.29563.1.S1_at--601--871Chr08:22993612..22993636 (25 bp)
ATGGCCAGGGCGACTATGATGGTGA
LOC_Os08g36640
Target Sequence 
GTGCCTACTCTTCCCTCGTGCTTGGCCGCCATGTGACGCAAGGGCCAACATGCCAGGGAACTTGACTCGGATCAGAGTGG
TGGTGGATAACGACCAAGTTGTGACAGAGGCTGGTTGGTTTGACGATGCCAGGGGCCAATACGACATTGGCGCGCTAGAA
GCGATGGAGCATGGCCAGGGCGACTATGATGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis