Browse Element(s) Details


OsAffx.29570.1.S1_at

Description tigr:9636.m03741
TID=OsAffx.29570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=3110001I17Rik protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3726011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37230Os.5139.2.S1_x_at2/118+23402279..23403127hypothetical protein
LOC_Os08g37230Os.5139.2.S1_at1/118+23402279..23403127hypothetical protein
LOC_Os08g37240NANA8+23407040..23407684transposon protein, putative, unclassified
LOC_Os08g37250OsAffx.17374.1.S1_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37250Os.8648.1.S1_s_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29570.1.S1_at--1125--10252Chr08:23419691..23419715 (25 bp)
TTTGTATGGCTCTTTCTTTTGTATG
LOC_Os08g37260
OsAffx.29570.1.S1_at--366--10411Chr08:23419605..23419629 (25 bp)
TTATTCTTTGTATTGCTGTCATGAG
LOC_Os08g37260
OsAffx.29570.1.S1_at--327--6051Chr08:23419583..23419607 (25 bp)
GAGATTTAAGTTGCTTTTGCTATCA
LOC_Os08g37260
OsAffx.29570.1.S1_at--864--5271Chr08:23419550..23419574 (25 bp)
GAATGATTCCCAATTACTAAGCCTT
LOC_Os08g37260
OsAffx.29570.1.S1_at--1003--9731Chr08:23419533..23419557 (25 bp)
TAAGCCTTTTTACACTAAGTCACAT
LOC_Os08g37260
OsAffx.29570.1.S1_at--535--3651Chr08:23419502..23419526 (25 bp)
CTTCATATTTTTGTGGCGGACAGTG
LOC_Os08g37260
OsAffx.29570.1.S1_at--275--6951Chr08:23419466..23419490 (25 bp)
GTAGAGGTAATGTCCTTTGACCCAA
LOC_Os08g37260
OsAffx.29570.1.S1_at--585--9251Chr08:23419454..23419478 (25 bp)
TCCTTTGACCCAAGGGCCTCATAGA
LOC_Os08g37260
OsAffx.29570.1.S1_at--581--1331Chr08:23419432..23419456 (25 bp)
AGAGGATAGCTCATTTCTCCTCTCC
LOC_Os08g37260
OsAffx.29570.1.S1_at--860--3751Chr08:23419413..23419437 (25 bp)
CTCTCCACTGTGCAATCCAAATTTA
LOC_Os08g37260
OsAffx.29570.1.S1_at--926--4351Chr08:23419386..23419410 (25 bp)
CCAGCATCTGTATCCACTAACTATT
LOC_Os08g37260
Target Sequence 
TTTGTATGGCTCTTTCTTTTGTATGTTATTCTTAGTAGTCAACTCAATATAGAAAGAATAACAATAGCTTTGCTCATATA
GGCTAATTATTCTTTGTATTGCTGTCATGAGATTTAAGTTGCTTTTGCTATCAACAATAATGAATGATTCCCAATTACTA
AGCCTTTTTACACTAAGTCACATAATGCACTTCATATTTTTGTGGCGGACAGTGATGTGGCATCAGTAGAGGTAATGTCC
TTTGACCCAAGGGCCTCATAGAGGATAGCTCATTTCTCCTCTCCACTGTGCAATCCAAATTTATACCAGCATCTGTATCC
ACTAACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis