Browse Element(s) Details


OsAffx.29599.2.S1_at

Description tigr:9632.m04095
TID=OsAffx.29599.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g428208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42770Os.47741.1.S1_x_at11/114+25095177..25101346expressed protein
LOC_Os04g42770Os.47741.2.S1_at10/114+25095177..25101346expressed protein
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein
LOC_Os04g42830OsAffx.16663.3.S1_x_at11/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_s_at4/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_x_at3/114+25127784..25129225Transferase family protein
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29599.2.S1_at--1037--3111Chr04:25126046..25126070 (25 bp)
AATTTTTTATGCTGTCTGTTTCGTC
LOC_Os04g42820
OsAffx.29599.2.S1_at--1095--10351Chr04:25126043..25126067 (25 bp)
TTTTTATGCTGTCTGTTTCGTCTAA
LOC_Os04g42820
OsAffx.29599.2.S1_at--706--10351Chr04:25126042..25126066 (25 bp)
TTTTATGCTGTCTGTTTCGTCTAAT
LOC_Os04g42820
OsAffx.29599.2.S1_at--396--10351Chr04:25126041..25126065 (25 bp)
TTTATGCTGTCTGTTTCGTCTAATA
LOC_Os04g42820
OsAffx.29599.2.S1_at--535--10431Chr04:25126040..25126064 (25 bp)
TTATGCTGTCTGTTTCGTCTAATAG
LOC_Os04g42820
OsAffx.29599.2.S1_at--967--10131Chr04:25126039..25126063 (25 bp)
TATGCTGTCTGTTTCGTCTAATAGC
LOC_Os04g42820
OsAffx.29599.2.S1_at--1159--611Chr04:25126038..25126062 (25 bp)
ATGCTGTCTGTTTCGTCTAATAGCA
LOC_Os04g42820
OsAffx.29599.2.S1_at--1156--9111Chr04:25126037..25126061 (25 bp)
TGCTGTCTGTTTCGTCTAATAGCAC
LOC_Os04g42820
Target Sequence 
AATTTTTTATGCTGTCTGTTTCGTCTAATAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29599.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis