Browse Element(s) Details


OsAffx.29607.1.S1_x_at

Description gb:NM_188978.1
DB_XREF= gi:34905039
GEN=P0686C03.1
TID=OsAffx.29607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.1 (P0686C03.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4031011/11transposon protein, putative, unclassified
LOC_Os05g406808/11hypothetical protein
LOC_Os08g332707/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40270OsAffx.6094.1.S1_x_at11/118+25360662..25363516Protein kinase domain containing protein
LOC_Os08g40280Os.56331.1.S1_at5/118+25365412..25368974Protein kinase domain containing protein, expressed
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40320Os.45902.1.A1_x_at1/118+25395399..25398189hypothetical protein
LOC_Os08g40330OsAffx.29608.2.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.3.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.2.S1_s_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29607.1.S1_x_at--835--2193Chr08:20598930..20598954 (25 bp)
ACAAATCATATCATCACAGCCTACG
LOC_Os08g33270
OsAffx.29607.1.S1_x_at--448--2153Chr08:20598945..20598969 (25 bp)
ACAGCCTACGATTTCTGATATGCAG
LOC_Os08g33270
OsAffx.29607.1.S1_x_at--162--8172Chr08:25388933..25388957 (25 bp)
GGAACAAAATTCAGCACACTCTACT
LOC_Os08g40310
OsAffx.29607.1.S1_x_at--632--2152Chr08:25388918..25388942 (25 bp)
ACACTCTACTTTTGTTGCGAGTCCA
LOC_Os08g40310
OsAffx.29607.1.S1_x_at--830--4613Chr08:20599071..20599091 (21 bp)
GCGAGTCCAAGTGCATTTCAGAATT
LOC_Os08g33270
OsAffx.29607.1.S1_x_at--272--3052Chr08:20599197..20599221 (25 bp)
AATCGTACTGATGCTAATATTGAAG
LOC_Os08g33270
OsAffx.29607.1.S1_x_at--37--9753Chr08:20599621..20599645 (25 bp)
TAATCATCGATGTACTTCAGTTCAA
LOC_Os08g33270
OsAffx.29607.1.S1_x_at--630--5214Chr08:20599835..20599859 (25 bp)
GAATTCTTTAACTTCTATGCTCTGT
LOC_Os08g33270
OsAffx.29607.1.S1_x_at--998--3691Chr08:25388127..25388151 (25 bp)
CTATGCTCTGTTGGCTAGATTTTCT
LOC_Os08g40310
OsAffx.29607.1.S1_x_at--353--10051Chr08:25388112..25388136 (25 bp)
TAGATTTTCTATTGTCAGGGCTCAC
LOC_Os08g40310
OsAffx.29607.1.S1_x_at--773--10213Chr08:20599873..20599897 (25 bp)
TATTGTCAGGGCTCACAACTACCAC
LOC_Os08g33270
Target Sequence 
ACAAATCATATCATCACAGCCTACGATTTCTGATATGCAGGAACAAAATTCAGCACACTCTACTTTTGTTGCGAGTCCAA
GTGCATTTCAGAATTCAATGATATTAACAACAAATCGTACTGATGCTAATATTGAAGAATGGAATAATGATGCGGCAAAT
GAGGCATATGAGAGTAATGAAGAGGATGCAATGGATAATTGGAATCTTGATATATTCAATTTGTTAGATGGTGAAAAGGA
ACCAAGCTCAATGGATAATCATCGATGTACTTCAGTTCAAGGAACAAGAGATGATGACAATAATCCAAATGATAACTCTG
AAACAAATCAACAAGAGCTGACAGAAGAAGACATAAATATTTTCGTAGAGAATGAACAGGAAGAAGCTACAAAGGGCAAT
AATGCAGCAATTGATAGCAGATATATACCAAGAGTTGGAACACAATTTAAGACTATTACAGAAGCACATGAATTCTTTAA
CTTCTATGCTCTGTTGGCTAGATTTTCTATTGTCAGGGCTCACAACTACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29607.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis