Browse Element(s) Details


OsAffx.29608.1.S1_s_at

Description gb:NM_188989.1
DB_XREF= gi:34905061
GEN=P0686C03.14
TID=OsAffx.29608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.14 (P0686C03.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4039011/11Sulfotransferase domain containing protein
LOC_Os08g403801/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein
LOC_Os08g40360OsAffx.9815.1.S1_at11/118+25418494..25424508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40380OsAffx.17432.1.S1_at11/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40380OsAffx.29608.1.S1_s_at1/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative
LOC_Os08g40420Os.9673.1.S1_at11/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40420Os.28438.3.S1_at10/118+25452147..25456481ternary complex factor MIP1, putative, expressed
LOC_Os08g40430Os.15707.1.S1_at11/118+25456144..25457751mitochondrial transcription termination factor, putative, expressed
LOC_Os08g40440OsAffx.17435.1.S1_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g40440OsAffx.17435.1.S1_s_at11/118+25458574..25460173NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29608.1.S1_s_at--1013--8092Chr08:25434610..25434634 (25 bp)
GGACCTCGTGCCGTTCATCGAGACG
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--798--9411Chr08:25434605..25434629 (25 bp)
TCGTGCCGTTCATCGAGACGCCATT
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--125--9151Chr08:25434602..25434626 (25 bp)
TGCCGTTCATCGAGACGCCATTCCG
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--511--1671Chr08:25434158..25434182 (25 bp)
AGCCGCCTGCCGGTGAACTTCTCCG
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--1060--491Chr08:25434124..25434148 (25 bp)
ATCGGATCGGCGGACGACCGATGGA
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--334--5831Chr08:25434109..25434133 (25 bp)
GACCGATGGAGAACTCGTCGTTTTT
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--1066--6231Chr08:25434105..25434129 (25 bp)
GATGGAGAACTCGTCGTTTTTTAGG
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--964--4091Chr08:25434076..25434100 (25 bp)
CGAAGGTTGGAGACTGGAAGAACAA
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--101--2511Chr08:25434053..25434077 (25 bp)
AACTTGACTCAAGAGATGGCGCAGA
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--521--6231Chr08:25434039..25434063 (25 bp)
GATGGCGCAGAAGCTTGATGCCGTT
LOC_Os08g40390
OsAffx.29608.1.S1_s_at--950--8451Chr08:25434037..25434061 (25 bp)
TGGCGCAGAAGCTTGATGCCGTTAT
LOC_Os08g40390
Target Sequence 
GGACCTCGTGCCGTTCATCGAGACGCCATTCCGCCACCTCCACCCTCTCTCTGCCCTCGACGCGCTCCCGTCACCGAGGC
TTCTCTCCACCCACCTGCCGCACCAGCTCCTCCCCCCGCGTGTCGCCGAGCTCGGCTGCCGCATCGTCTACCTCTGCCGG
GAGCCCAAGGACGTCGTCGTCTCCACATGGCACTTCATGAACAAGTACGACGACATGATGGCCGACCCGGCCGGCCACGT
CAAGAAACTCGCCGAGTTCCTCCGCGTCCCGTTCACTGACGAGGAGGTCGGCACCGGCGTCGTCGTGGAGGTTGTGAGGC
TGTGCAGCTTCGAGAAGCTGAGCCGCCTGCCGGTGAACTTCTCCGGGGTGGTTGATCGGATCGGCGGACGACCGATGGAG
AACTCGTCGTTTTTTAGGAAGGCGAAGGTTGGAGACTGGAAGAACAACTTGACTCAAGAGATGGCGCAGAAGCTTGATGC
CGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29608.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis