Browse Element(s) Details


OsAffx.29627.2.S1_at

Description tigr:9636.m04249
TID=OsAffx.29627.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Exo70 exocyst complex subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4182011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29627.2.S1_at--1096--4411Chr08:26282523..26282547 (25 bp)
GCCAGATCAGGCAGTACGAGACAGG
LOC_Os08g41820
OsAffx.29627.2.S1_at--109--9951Chr08:26282537..26282561 (25 bp)
TACGAGACAGGCTACCTCCGGGCGT
LOC_Os08g41820
OsAffx.29627.2.S1_at--242--4071Chr08:26282652..26282676 (25 bp)
CGAGGAGCTTCAACGCGGCGTTCGA
LOC_Os08g41820
OsAffx.29627.2.S1_at--484--5391Chr08:26282848..26282872 (25 bp)
GAAGCACATCAAGTACAGCCTCGAG
LOC_Os08g41820
OsAffx.29627.2.S1_at--944--9371Chr08:26282868..26282892 (25 bp)
TCGAGGATCTCGAGGACTACATGCT
LOC_Os08g41820
OsAffx.29627.2.S1_at--855--951Chr08:26282880..26282904 (25 bp)
AGGACTACATGCTCGATTTCTTCGA
LOC_Os08g41820
OsAffx.29627.2.S1_at--531--9091Chr08:26282889..26282913 (25 bp)
TGCTCGATTTCTTCGAAGGCGTTCA
LOC_Os08g41820
OsAffx.29627.2.S1_at--776--5271Chr08:26282903..26282927 (25 bp)
GAAGGCGTTCAGAAGTTCGTCAGGT
LOC_Os08g41820
OsAffx.29627.2.S1_at--559--6451Chr08:26282928..26282952 (25 bp)
GATCACAAATTCAGAGTTTCGCAGA
LOC_Os08g41820
OsAffx.29627.2.S1_at--390--3431Chr08:26282984..26283008 (25 bp)
CAGAGTTTCAGATATTTCAGAGCAG
LOC_Os08g41820
OsAffx.29627.2.S1_at--427--1331Chr08:26283007..26283031 (25 bp)
AGAGGAGCTCTGCTTGACTTGTAGA
LOC_Os08g41820
Target Sequence 
GCCAGATCAGGCAGTACGAGACAGGCTACCTCCGGGCGTCGTGGATGTCCGTGCTGGCCTCGCTCCGCGACGACGCCTCG
CCGGCGGCGGCGCACGGGCACGGCGGCAGGGCGGCGCTGAAGGAGAAGGCGAGGAGCTTCAACGCGGCGTTCGAGGAGCT
GTACCGGAGCCAGACGGCGTGGAAGGTGACCGACCCGCAGCTCCGGGAGGAGCTCCGGATCGCCGTGTCGGAGCGGCTCA
TCCCGGCGTACCGCTCGTTCGTCGGCCGGTCGAGGCAGCTGCTGGAGTCCGGCAGCAGCAGCGGCCGCCACTCCTCGTCG
GCGGCGAAGCACATCAAGTACAGCCTCGAGGATCTCGAGGACTACATGCTCGATTTCTTCGAAGGCGTTCAGAAGTTCGT
CAGGTGATCACAAATTCAGAGTTTCGCAGAATTTTCTGAGAGTTTCAGAATTTCACAGATTCAGAGTTTCAGATATTTCA
GAGCAGAGGAGCTCTGCTTGACTTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29627.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis