Browse Element(s) Details


OsAffx.29757.1.S1_x_at

Description gb:NM_196424.1
DB_XREF= gi:37534207
TID=OsAffx.29757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBa0060A14.14), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2665011/11Transposable element protein, putative, MuDR
LOC_Os07g420008/11hypothetical protein
LOC_Os05g461307/11transposon protein, putative, Mutator sub-class
LOC_Os09g081207/11Beta-fructofuranosidase, insoluble isoenzyme 7 precursor, putative, expressed
LOC_Os12g399503/11hypothetical protein
LOC_Os03g263292/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29757.1.S1_x_at--475--4813Chr05:26676169..26676188 (20 bp)
GCTCATGAGGAACTACCGCCTTTTC
LOC_Os05g46130
OsAffx.29757.1.S1_x_at--132--4494Chr09:4192760..4192784 (25 bp)
GCCGGCATGGACTCTAGCTGACATA
LOC_Os09g08120
OsAffx.29757.1.S1_x_at--710--8954Chr09:4192778..4192802 (25 bp)
TGACATAGCTACAGATCCCGAGGAT
LOC_Os09g08120
OsAffx.29757.1.S1_x_at--831--6314Chr09:4192811..4192835 (25 bp)
GATGAACGAGTATGACACCCACACT
LOC_Os09g08120
OsAffx.29757.1.S1_x_at--567--1171Chr10:13582570..13582594 (25 bp)
AGTACGGGCCTGTACATGACCGAGT
LOC_Os10g26650
OsAffx.29757.1.S1_x_at--1028--2574Chr09:4192978..4193002 (25 bp)
AACGACGCGGGTGTTGCCCTTGGCA
LOC_Os09g08120
OsAffx.29757.1.S1_x_at--650--10874Chr09:4192997..4193021 (25 bp)
TTGGCACACCTGCTGGGTCAGAGAA
LOC_Os09g08120
OsAffx.29757.1.S1_x_at--388--7676Chr12:24658583..24658606 (24 bp)
GGGATACTTCGGAGCGCACTTCAGA
LOC_Os12g39950
OsAffx.29757.1.S1_x_at--77--10794Chr12:24658718..24658742 (25 bp)
TTGTAGGTCCACAGACGCAGTCGAC
LOC_Os12g39950
OsAffx.29757.1.S1_x_at--54--2773Chr12:24658751..24658775 (25 bp)
AAGACTAACGCGGACACAGGCCGGA
LOC_Os12g39950
OsAffx.29757.1.S1_x_at--1075--2731Chr10:13582082..13582106 (25 bp)
AAGAAACCGGGTCATCTCAGCTTGC
LOC_Os10g26650
Target Sequence 
GCTCATGAGGAACTACCGCCTTTTCCTTCGGCCGGCATGGACTCTAGCTGACATAGCTACAGATCCCGAGGATGTTGAGG
AGATGAACGAGTATGACACCCACACTCGAGCAGGGGCGACGGTCGAGTACGGGCCTGTACATGACCGAGTGGCACGTGAG
CTGATGAGGTCCGTGAACGACGCGGGTGTTGCCCTTGGCACACCTGCTGGGTCAGAGAATGAAGTTGGGATACTTCGGAG
CGCACTTCAGAGGCTAAAACAACAAAGTCGGATGTTAGCGGCAAGACTTGGTTGTAGGTCCACAGACGCAGTCGACCCAC
AACCAAGACTAACGCGGACACAGGCCGGAGAAACAAGTCAACAAAGAGCTGAAGAGGAAGGGGAGGAAGAACATGATGAA
GGGGAGGAAGAACATGAGGAAGGGGAAGAAGGAGATGGACAAAGTGACGAAGAGGAAGAGGAACAACCCGAAGAAACCGG
GTCATCTCAGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29757.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis