Browse Element(s) Details


OsAffx.29875.1.S1_at

Description tigr:9637.m01388
TID=OsAffx.29875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable Cytochrome B5 F8A5.18 (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1652011/11Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16510Os.27227.1.S1_at11/119+10127836..10130089WRKY DNA binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_at11/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.29875.1.S1_s_at10/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520OsAffx.6277.1.S1_at2/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16520Os.52634.1.S1_at1/119+10130348..10137130Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os09g16530Os.14919.1.S1_at5/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530OsAffx.29313.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16530Os.56216.1.S1_at1/119+10138224..10144240Transposable element protein, putative, MuDR
LOC_Os09g16540Os.53941.1.S1_at11/119+10151940..10156507Protein kinase domain containing protein, expressed
LOC_Os09g16550OsAffx.29876.1.S1_at11/119+10157596..10159953ankyrin repeat family protein, putative
LOC_Os09g16560OsAffx.17743.1.S1_at10/119+10160766..10162952hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29875.1.S1_at--110--10731Chr09:10132132..10132156 (25 bp)
TTGCTTCTTGTACTAGGAGCCATCT
LOC_Os09g16520
OsAffx.29875.1.S1_at--54--10551Chr09:10132128..10132152 (25 bp)
TTCTTGTACTAGGAGCCATCTTTGT
LOC_Os09g16520
OsAffx.29875.1.S1_at--484--7011Chr09:10132123..10132147 (25 bp)
GTACTAGGAGCCATCTTTGTTATTC
LOC_Os09g16520
OsAffx.29875.1.S1_at--697--3692Chr09:10132120..10132144 (25 bp)
CTAGGAGCCATCTTTGTTATTCCAA
LOC_Os09g16520
OsAffx.29875.1.S1_at--509--8092Chr09:10132117..10132141 (25 bp)
GGAGCCATCTTTGTTATTCCAAAAT
LOC_Os09g16520
OsAffx.29875.1.S1_at--493--6791Chr09:10132105..10132129 (25 bp)
GTTATTCCAAAATCCAACAACAATG
LOC_Os09g16520
OsAffx.29875.1.S1_at--239--5291Chr09:10132000..10132024 (25 bp)
GAAGGAAATACAATCACCAAACGGT
LOC_Os09g16520
OsAffx.29875.1.S1_at--274--9851Chr09:10131992..10132016 (25 bp)
TACAATCACCAAACGGTGGAATGGT
LOC_Os09g16520
OsAffx.29875.1.S1_at--1052--8131Chr09:10131554..10131785 (25 bp)
GGAATGGTGTATGACGTAACCTCTT
LOC_Os09g16520
OsAffx.29875.1.S1_at--458--7431Chr09:10131548..10131572 (25 bp)
GTGTATGACGTAACCTCTTATGTGG
LOC_Os09g16520
OsAffx.29875.1.S1_at--639--6911Chr09:10131546..10131570 (25 bp)
GTATGACGTAACCTCTTATGTGGAG
LOC_Os09g16520
Target Sequence 
TTGCTTCTTGTACTAGGAGCCATCTTTGTTATTCCAAAATCCAACAACAATGGTAAAGGGAAGGAAATACAATCACCAAA
CGGTGGAATGGTGTATGACGTAACCTCTTATGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis