Browse Element(s) Details


OsAffx.29937.1.S1_s_at

Description tigr:9637.m01739
TID=OsAffx.29937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2040011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20380NANA9+12239307..12242725transposon protein, putative, Mutator sub-class
LOC_Os09g20390OsAffx.17798.1.S1_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.1.A1_s_at11/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20390Os.14828.2.A1_at6/119+12250890..12253077trehalose-phosphatase family protein, expressed
LOC_Os09g20400Os.54488.2.S1_at11/119+12262315..12266429expressed protein
LOC_Os09g20400OsAffx.29937.1.S1_s_at11/119+12262315..12266429expressed protein
LOC_Os09g20400Os.54488.1.S1_at10/119+12262315..12266429expressed protein
LOC_Os09g20410OsAffx.29938.1.S1_at11/119+12278794..12279745hypothetical protein
LOC_Os09g20420OsAffx.7080.2.A1_at11/119+12283152..12284276hypothetical protein
LOC_Os09g20430Os.18154.1.S1_at10/119+12288982..12293954SCO1/SenC family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29937.1.S1_s_at--509--5951Chr09:12262828..12262852 (25 bp)
GAGCAAGTCGGTCGTGTCCGACCTT
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--507--8711Chr09:12262814..12262838 (25 bp)
TGTCCGACCTTCTGGAGGCCATCGA
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--60--4091Chr09:12262810..12262834 (25 bp)
CGACCTTCTGGAGGCCATCGAGACG
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--695--4531Chr09:12262729..12262753 (25 bp)
GCCCGGGTGGTGGAGCCTCAACGTG
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--468--2571Chr09:12262710..12262734 (25 bp)
AACGTGGAGGGCGTAATGCTGCTGC
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--919--611Chr09:12262695..12262719 (25 bp)
ATGCTGCTGCTCAGGGTCGTCCAGG
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--765--3831Chr09:12262689..12262713 (25 bp)
CTGCTCAGGGTCGTCCAGGCGGTCA
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--1108--8631Chr09:12262514..12262538 (25 bp)
TGGGCGCGTGTGGAACTCCTGATCT
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--821--8171Chr09:12262503..12262527 (25 bp)
GGAACTCCTGATCTGAGGCTTTGTG
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--386--6411Chr09:12262494..12262518 (25 bp)
GATCTGAGGCTTTGTGTTAATGTTC
LOC_Os09g20400
OsAffx.29937.1.S1_s_at--771--9731Chr09:12262477..12262501 (25 bp)
TAATGTTCCCAAAAGTGAACCGAGA
LOC_Os09g20400
Target Sequence 
GAGCAAGTCGGTCGTGTCCGACCTTCTGGAGGCCATCGAGACGAGCCGTACGTCGCCGCGGCGGGAGGCGGCGCGGAGGG
CGGGCGGCGGCGCCGGCGGGCCCGGGTGGTGGAGCCTCAACGTGGAGGGCGTAATGCTGCTGCTCAGGGTCGTCCAGGCG
GTCAGGGGGCGGAAGCTGCCGGCGCCGGAGAAGAGGACGCGCGACGGGGCGAGCGACGCCGCCGGCCTGAGAGGCGGCGG
CATCATGGGCGGCGGCGGCGGCGGCGCCGCGAGGCGGTGGTGCGGCGGCCGGCCGAAGAAGCTGGGCAACACGGTGGGCG
CGTGTGGAACTCCTGATCTGAGGCTTTGTGTTAATGTTCCCAAAAGTGAACCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29937.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis