Browse Element(s) Details


OsAffx.29943.2.S1_x_at

Description tigr:9637.m01758
TID=OsAffx.29943.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2057011/11hypothetical protein
LOC_Os09g109101/11fiber protein Fb34, putative, expressed
LOC_Os05g156701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29943.2.S1_x_at--887--1611Chr09:12393622..12393646 (25 bp)
AGCTGGAACTGCAACCGGAGGAGAA
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--552--5451Chr09:12393627..12393651 (25 bp)
GAACTGCAACCGGAGGAGAAGACTG
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--143--1971Chr09:12393629..12393653 (25 bp)
ACTGCAACCGGAGGAGAAGACTGTC
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--240--2771Chr09:12393645..12393706 (25 bp)
AAGACTGTCGTGGTCACCAAGGACG
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--1138--1891Chr09:12393648..12393709 (25 bp)
ACTGTCGTGGTCACCAAGGACGAAG
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--915--4092Chr09:12393705..12393729 (25 bp)
CGAAGGGACCAATACAGTCGAGGCT
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--165--9871Chr09:12393717..12393741 (25 bp)
TACAGTCGAGGCTATCGAGCGTCGC
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--518--4011Chr09:12393838..12393862 (25 bp)
CGTCGCGGTCGCGTCCGAGCCAGCC
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--1125--5411Chr09:12393923..12393947 (25 bp)
GAAGCCGAGGCGACCAGCTTTGCCG
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--1106--4152Chr09:12393984..12394008 (25 bp)
CGCCGCCGCTGGCTACTGATGATTT
LOC_Os09g20570
OsAffx.29943.2.S1_x_at--1137--8751Chr09:12394020..12394044 (25 bp)
TGTTACGTATCCGTGTAGAAGAAAT
LOC_Os09g20570
Target Sequence 
AGCTGGAACTGCAACCGGAGGAGAAGACTGTCGTGGTCACCAAGGACGAAGGGACCAATACAGTCGAGGCTATCGAGCGT
CGCCGCCGCGTCCGAGCCGGCCGGGGCCGCGGAAGCCGAGGAGACTGTCGTCGCCGCCGCGTCCAAGCGGGCCGCGGCCG
CGGAAGCCGAGGCGACCGTCGTCGCGGTCGCGTCCGAGCCAGCCGTGGCCACGGAAGCCGAGGCGGCCGTCTTCACCGCC
GCGTCCGAGCCAGCCGCGGCCGCGGAAGCCGAGGCGACCAGCTTTGCCGCCGCATCCGAGCCAGCCATGGCCGCGGAAGC
CGAGGCGCCGCCGCTGGCTACTGATGATTTGGATTTGCTGATGTTACGTATCCGTGTAGAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29943.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis