Browse Element(s) Details


OsAffx.30006.3.S1_x_at

Description tigr:9633.m02338
TID=OsAffx.30006.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2593011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein
LOC_Os05g25990NANA5+15018231..15019229hypothetical protein
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30006.3.S1_x_at--44--4071Chr05:15003452..15003476 (25 bp)
CGACGGCCAAAACGGAGCCCGCGTG
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--391--8351Chr05:15003706..15003730 (25 bp)
GGCTGGGTGTTCTTGCTTACGGCAA
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--611--9931Chr05:15003723..15003747 (25 bp)
TACGGCAAGGCAGGTGCATTGCAAT
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--188--71Chr05:15003740..15003764 (25 bp)
ATTGCAATGTGGTCAAAGAGCGGGT
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--665--2771Chr05:15003755..15003779 (25 bp)
AAGAGCGGGTTCAGTTCCAGTGCCT
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--586--8611Chr05:15003817..15003841 (25 bp)
TGGTGATGTGCCCAATGCTCGCAAG
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--780--3791Chr05:15003834..15003858 (25 bp)
CTCGCAAGGTGCTTGATGGGATTAC
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--992--2871Chr05:15003839..15003863 (25 bp)
AAGGTGCTTGATGGGATTACTTGCC
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--195--5011Chr05:15003885..15003909 (25 bp)
GCATGGTTGCTTGCTATCATCGAGT
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--108--3771Chr05:15003961..15003985 (25 bp)
CTCTGCTACGGATCAAGTGAGCAAG
LOC_Os05g25930
OsAffx.30006.3.S1_x_at--196--1931Chr05:15003968..15003992 (25 bp)
ACGGATCAAGTGAGCAAGATGGCCA
LOC_Os05g25930
Target Sequence 
CGACGGCCAAAACGGAGCCCGCGTGCGCGGCGCCGGGGCGACGACATCAGGCTCGGCGGCGGCGGCTTGATGCGGCCGGG
CGGCGGCGACGGCGTCAAGGGCCCCGAGGCGTCGGGGTCGACCTCCACGATGGCGACGACGCAGCATCAGCCACAGTGCT
CCGGCTAGGGCGCGGCGTCCGCGTCGGCGAGCCAGAGCGGTGGTGGCGCCGCCAGGCTGGGTGTTCTTGCTTACGGCAAG
GCAGGTGCATTGCAATGTGGTCAAAGAGCGGGTTCAGTTCCAGTGCCTTCTGCGAAGCGGCGTTGGTGGACATGTATGCC
AAATGTGGTGATGTGCCCAATGCTCGCAAGGTGCTTGATGGGATTACTTGCCCAGACACAATATGCTCATCAAGCATGGT
TGCTTGCTATCATCGAGTTGGACGCTACCAGGAAGCGTTGGCTTTGTTTTCTAGGATGGATAAGATGGGCTCTGCTACGG
ATCAAGTGAGCAAGATGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30006.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis