Browse Element(s) Details


OsAffx.3003.1.S1_at

Description tigr:9630.m04777
TID=OsAffx.3003.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin-conjugating enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4892011/11Ubiquitin-conjugating enzyme family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48980Os.12153.1.S1_at11/112+29941372..29943689expressed protein
LOC_Os02g48980OsAffx.24792.1.S1_at11/112+29941372..29943689expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3003.1.S1_at--25--5391Chr02:29917234..29917258 (25 bp)
GAAGCAATCCACCACGGCGCGCAGA
LOC_Os02g48920
OsAffx.3003.1.S1_at--677--2611Chr02:29917106..29917130 (25 bp)
AACCCGTGACGGACCTCTTGCACTG
LOC_Os02g48920
OsAffx.3003.1.S1_at--1115--9351Chr02:29917025..29917049 (25 bp)
TCGACGTCTGGTACCCCAACGAGTA
LOC_Os02g48920
OsAffx.3003.1.S1_at--364--1571Chr02:29916983..29917007 (25 bp)
AGCTCACCTTCAAGACCAAGGTAAA
LOC_Os02g48920
OsAffx.3003.1.S1_at--634--3191Chr02:29916967..29916991 (25 bp)
CAAGGTAAAATCACTCGCCCAATCT
LOC_Os02g48920
OsAffx.3003.1.S1_at--1064--9331Chr02:29916953..29916977 (25 bp)
TCGCCCAATCTCTGAGTAGATCACT
LOC_Os02g48920
OsAffx.3003.1.S1_at--931--6431Chr02:29916935..29916959 (25 bp)
GATCACTAGCTTGTGTTCATCGCCA
LOC_Os02g48920
OsAffx.3003.1.S1_at--904--6731Chr02:29916921..29916945 (25 bp)
GTTCATCGCCAGATATCCCAATTGA
LOC_Os02g48920
OsAffx.3003.1.S1_at--515--10771Chr02:29916870..29916924 (25 bp)
TTGATGCTTCAATCTCGTGTACCAT
LOC_Os02g48920
OsAffx.3003.1.S1_at--1050--6951Chr02:29916852..29916876 (25 bp)
GTACCATCCGAACATAGACGACGAG
LOC_Os02g48920
OsAffx.3003.1.S1_at--1154--8611Chr02:29916817..29916841 (25 bp)
TGGTGGACGTGCTTCACGGCTCCTG
LOC_Os02g48920
Target Sequence 
GAAGCAATCCACCACGGCGCGCAGATGGTGGATGAAGGCGGATCCACGGAAGGCCGCGCAGCGCCGTATCTCCCGCGAGC
TGGAGGATCTCTGGCTCGACCCGCCGGCGTACTGCCGCCCCGGCCCTGAACCCGTGACGGACCTCTTGCACTGGGAGGTG
ATCATCGACGGCCCGCCCGGCACCCCCTACGCCGGCGGCACGTTCCCCGTCGACGTCTGGTACCCCAACGAGTACCCCTT
CCAACCCCCGAAGCTCACCTTCAAGACCAAGGTAAAATCACTCGCCCAATCTCTGAGTAGATCACTAGCTTGTGTTCATC
GCCAGATATCCCAATTGATGCTTCAATCTCGTGTACCATCCGAACATAGACGACGAGGGGCAGATGGTGGTGGACGTGCT
TCACGGCTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis