Browse Element(s) Details


Os.50522.1.S1_at

Description gb:AK069691.1
DB_XREF= gi:32979715
TID=Os.50522.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026H24, full insert sequence.
FL= gb:AK121603.1 gb:AK069691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4890011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50522.1.S1_at--42--9551Chr02:29905874..29905898 (25 bp)
TCTAGCCTGGAGTCTTTGCTTGTTT
LOC_Os02g48900
Os.50522.1.S1_at--702--10591Chr02:29905889..29905913 (25 bp)
TTGCTTGTTTTAGCACCTCGGTTAA
LOC_Os02g48900
Os.50522.1.S1_at--604--31Chr02:29905981..29906005 (25 bp)
ATTGGTCATGTAGTATCCTTCCCCT
LOC_Os02g48900
Os.50522.1.S1_at--805--7171Chr02:29906025..29906049 (25 bp)
GTCTGAATTTTCTTTGTCGATACTA
LOC_Os02g48900
Os.50522.1.S1_at--525--5251Chr02:29906115..29906139 (25 bp)
GAATCTTTTCGGCTCGATCATTTCT
LOC_Os02g48900
Os.50522.1.S1_at--1060--9551Chr02:29906153..29906177 (25 bp)
TCTTTTCGCCGCCTTGAATTAAAAT
LOC_Os02g48900
Os.50522.1.S1_at--945--8831Chr02:29906193..29906217 (25 bp)
TGATCCGTCGCCACCAGAAGAAAAG
LOC_Os02g48900
Os.50522.1.S1_at--1014--7831Chr02:29906228..29906252 (25 bp)
GGTACACACTTTTGTCGACGGCTAA
LOC_Os02g48900
Os.50522.1.S1_at--1122--5011Chr02:29906270..29906294 (25 bp)
GCAGGTGCAGCGATCGATCTTATCA
LOC_Os02g48900
Os.50522.1.S1_at--953--4631Chr02:29906303..29906327 (25 bp)
GCGTTTTTCCAATGCTTTGTCCTGA
LOC_Os02g48900
Os.50522.1.S1_at--332--5131Chr02:29906363..29906387 (25 bp)
GCAAAAACTCCGTCCAAGATGGCAT
LOC_Os02g48900
Target Sequence 
TCTAGCCTGGAGTCTTTGCTTGTTTTAGCACCTCGGTTAANCTAGTACAACTAGAATCAACATGGTGAATGGACGTAAAT
ATGGTGGTAGTGTAACCACAAATTTGTATTGGTCATGTAGTATCCTTCCCCTGAAAACATTTTCAGGGGAAGTCTGAATT
TTCTTTGTCGATACTATAACTAACTTAAGAAAAAAATGAAGAAATGACAGCGAGGGTGGGAGCCAAATGACAACCAAAAT
CGAATCTTTTCGGCTCGATCATTTCTCTTCTTTTCCAACTCTTTTCGCCGCCTTGAATTAAAATATACAGGACAGTCAAT
GATCCGTCGCCACCAGAAGAAAAGAGTTTTGTTAGGTACACACTTTTGTCGACGGCTAATTGTTGCCGGGCGGCACGCAG
GTGCAGCGATCGATCTTATCACCACACAAGCGTTTTTCCAATGCTTTGTCCTGACCGACAATTTTTTTTGTACAAATCCA
TTATTAGCGGCAAAAACTCCGTCCAAGATGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis