Browse Element(s) Details


Os.50522.1.S2_at

Description gb:AK121603.1
DB_XREF= gi:37991226
TID=Os.50522.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50522 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041D21, full insert sequence.
FL= gb:AK121603.1 gb:AK069691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4890011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50522.1.S2_at--292--8951Chr02:29906914..29906938 (25 bp)
TGACTTGAATCATCCAGCACCGATC
LOC_Os02g48900
Os.50522.1.S2_at--302--10191Chr02:29906944..29906968 (25 bp)
TATTACGGCTGCATGTAGGCACGCT
LOC_Os02g48900
Os.50522.1.S2_at--745--10091Chr02:29906959..29906983 (25 bp)
TAGGCACGCTCAACAGAAACTCGGT
LOC_Os02g48900
Os.50522.1.S2_at--454--10051Chr02:29906995..29907019 (25 bp)
TAGTTTGCCTAGTTAGCTGGGCCAC
LOC_Os02g48900
Os.50522.1.S2_at--835--8571Chr02:29907023..29907047 (25 bp)
TGGATTGTACTCTCACCGTATCAAA
LOC_Os02g48900
Os.50522.1.S2_at--703--10431Chr02:29907176..29907200 (25 bp)
TTAGTTCTCCAGTCATCCAAAGCAG
LOC_Os02g48900
Os.50522.1.S2_at--608--551Chr02:29907208..29907232 (25 bp)
ATCCTGGTTGTTCCCACTTGAGAAA
LOC_Os02g48900
Os.50522.1.S2_at--690--2251Chr02:29907233..29907257 (25 bp)
AAATATCTTTGGTTGCTCGTCATAA
LOC_Os02g48900
Os.50522.1.S2_at--1026--7411Chr02:29907294..29907318 (25 bp)
GTGTTCTGTACTTAGGCACCAAGAC
LOC_Os02g48900
Os.50522.1.S2_at--568--6751Chr02:29907329..29907353 (25 bp)
GTTAATTTGTGGTCCTCGTTATAGA
LOC_Os02g48900
Os.50522.1.S2_at--1142--5651Chr02:29907352..29907376 (25 bp)
GACATCAGACAATCACTCCATTATC
LOC_Os02g48900
Target Sequence 
TGACTTGAATCATCCAGCACCGATCGATGATATTACGGCTGCATGTAGGCACGCTCAACAGAAACTCGGTGCTGCTGTAA
ATAGTTTGCCTAGTTAGCTGGGCCACCTCTGGATTGTACTCTCACCGTATCAAAATAAGTATAACAGCTTAATATATGAT
GAGACACTAGGATACGTTACATTGCTATATTTTGATATGGAAGTAGTACTACTGTTGTACGTGATGGTCCAGTCCAACGC
CCCCTGGCTTCTTCAGAAGTGGTTAGTTCTCCAGTCATCCAAAGCAGCAGTACAATCCTGGTTGTTCCCACTTGAGAAAA
AATATCTTTGGTTGCTCGTCATAATAGAGGGGGGAAGGCAAGGTACCATATGCTTTGTAGGTGTTCTGTACTTAGGCACC
AAGACTGGGTGTTGTGTTAATTTGTGGTCCTCGTTATAGACATCAGACAATCACTCCATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50522.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis