Browse Element(s) Details


Os.24061.1.A1_at

Description gb:AK108167.1
DB_XREF= gi:32993376
TID=Os.24061.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H07, full insert sequence.
FL= gb:AK108167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4891011/11Ubiquitin-conjugating enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os02g48920OsAffx.3003.1.S1_at11/112+29915784..29917308Ubiquitin-conjugating enzyme family protein
LOC_Os02g48930NANA2+29918103..29921055transposon protein, putative, Mutator sub-class
LOC_Os02g48940Os.49661.1.S1_at3/112+29921620..29924744expressed protein
LOC_Os02g48950OsAffx.12556.1.S1_at11/112+29925758..29928010Ubiquitin-conjugating enzyme family protein
LOC_Os02g48964Os.14995.1.S1_a_at11/112+29928601..29935779WD-40 repeat family protein, putative, expressed
LOC_Os02g48964OsAffx.30727.1.S1_at1/112+29928601..29935779WD-40 repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24061.1.A1_at--443--1071Chr02:29913942..29913966 (25 bp)
CGGCCTTGACGATCAACAAACTCCT
LOC_Os02g48910
Os.24061.1.A1_at--956--531Chr02:29913859..29913883 (25 bp)
ATCGCCAAGCAGTACAAGCACGAGT
LOC_Os02g48910
Os.24061.1.A1_at--947--10851Chr02:29913806..29913830 (25 bp)
TTGGACGCAGAAGCACTCCTCGACG
LOC_Os02g48910
Os.24061.1.A1_at--696--7891Chr02:29913670..29913694 (25 bp)
GGTTCAGTAAGCAGCAGCCGCATTC
LOC_Os02g48910
Os.24061.1.A1_at--182--1671Chr02:29913655..29913679 (25 bp)
AGCCGCATTCCGTTGCTTATGAAGG
LOC_Os02g48910
Os.24061.1.A1_at--88--7151Chr02:29913587..29913611 (25 bp)
GTCTTCTTAATTATCGTCTACGTAC
LOC_Os02g48910
Os.24061.1.A1_at--859--7151Chr02:29913572..29913596 (25 bp)
GTCTACGTACTGCACAGACACTGAA
LOC_Os02g48910
Os.24061.1.A1_at--159--6071Chr02:29913529..29913553 (25 bp)
GAGTTCTTTCTTCCTCACAGATGAA
LOC_Os02g48910
Os.24061.1.A1_at--897--2031Chr02:29913447..29913471 (25 bp)
ACTTGTATCAAATCTTCAGGTTATG
LOC_Os02g48910
Os.24061.1.A1_at--106--7891Chr02:29913429..29913453 (25 bp)
GGTTATGATCTGTCACCACACGGTA
LOC_Os02g48910
Os.24061.1.A1_at--54--3511Chr02:29913400..29913424 (25 bp)
CATGGAGCTGCTGACTATGAGGAGT
LOC_Os02g48910
Target Sequence 
CGGCCTTGACGATCAACAAACTCCTCTTGTGCTTCGTCTCCGTCCTCTTCGACCCCCTGCTCGACCGCCCGACCAACCGC
NGCATCGCCAAGCAGTACAAGCACGAGTACGAGGCGTACGAGGAGAAGGCCANGGCTTGGACGCAGAAGCACTCCTCGAC
GCCGATCGTNTCGCACTACCCNCCGTACGCTGTCATCGGCAGCACGCCGCCGGCTGTTCCTNACTTCCCAGCGACTGCAG
CCAGGAGAAAGGCTGCTGCATCTTCAGCTTCAGGTTCAGTAAGCAGCAGCCGCATTCCGTTGCTTATGAAGGATGAGAGT
ATCTGGAGAANGACAATGAAGNTTTTTTCAGGGTTAGTCTTCTTAATTATCGTCTACGTACTGCACAGACACTGAAAACA
GATNAGGGAAATTAGAGTTCTTTCTTCCTCACAGATGAAATATGTTATATCTAGAATTTTATTTTACTGTATTGTGAATT
GTTGAGAGGTATGCATACTTGTATCAAATCTTCAGGTTATGATCTGTCACCACACGGTANTGACATGGAGCTGCTGACTA
TGAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24061.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis