Browse Element(s) Details


OsAffx.30062.1.S1_at

Description tigr:9637.m02438
TID=OsAffx.30062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g276907/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein
LOC_Os09g27690Os.8438.1.S1_at11/119+16851237..16853657expressed protein
LOC_Os09g27690OsAffx.30062.1.S1_at7/119+16851237..16853657expressed protein
LOC_Os09g27700Os.20136.1.S1_a_at11/119+16854329..16860063microtubule associated protein family protein, putative, expressed
LOC_Os09g27710OsAffx.17938.1.S1_at11/119+16866459..16867177hypothetical protein
LOC_Os09g27720OsAffx.17939.1.S1_at11/119+16869210..16869963hypothetical protein
LOC_Os09g27730OsAffx.6418.1.S1_s_at11/119+16874540..16875338HVA22 protein, putative, expressed
LOC_Os09g27730OsAffx.6418.1.S1_at11/119+16874540..16875338HVA22 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30062.1.S1_at--409--6011Chr09:16850355..16850379 (25 bp)
GAGAGCTCACTTACTATGGTGGCAA
NONE
OsAffx.30062.1.S1_at--492--7531Chr09:16850373..16850397 (25 bp)
GTGGCAACGACAACTCGGGTTGCAA
NONE
OsAffx.30062.1.S1_at--962--5171Chr09:16850394..16850418 (25 bp)
GCAAGTGTGAGGACGTTAGCATAGA
NONE
OsAffx.30062.1.S1_at--1063--4451Chr09:16850437..16850461 (25 bp)
GCCTCCTTACCAAGGCCCTTGTAGA
NONE
OsAffx.30062.1.S1_at--925--9291Chr09:16851729..16851753 (25 bp)
TCCGCTTCTGATGGTTGTAGTAGTA
LOC_Os09g27690
OsAffx.30062.1.S1_at--889--10051Chr09:16851752..16851776 (25 bp)
TAGTAGTTTCTACGGCGCATCGTGG
LOC_Os09g27690
OsAffx.30062.1.S1_at--657--9911Chr09:16851762..16851786 (25 bp)
TACGGCGCATCGTGGAACCCTAATG
LOC_Os09g27690
OsAffx.30062.1.S1_at--909--6211Chr09:16851773..16851797 (25 bp)
GTGGAACCCTAATGCGTTTTTCGCT
LOC_Os09g27690
OsAffx.30062.1.S1_at--436--9771Chr09:16851782..16851806 (25 bp)
TAATGCGTTTTTCGCTATGCCGCTG
LOC_Os09g27690
OsAffx.30062.1.S1_at--1104--10131Chr09:16851797..16851821 (25 bp)
TATGCCGCTGGCTAATGCTGGAGCT
LOC_Os09g27690
OsAffx.30062.1.S1_at--138--3031Chr09:16851810..16851834 (25 bp)
AATGCTGGAGCTGTTACAGGTGGCC
LOC_Os09g27690
Target Sequence 
GAGAGCTCACTTACTATGGTGGCAACGACAACTCGGGTTGCAAGTGTGAGGACGTTAGCATAGAAGACAATGCCTGGGCC
AGGCCTCCTTACCAAGGCCCTTGTAGAGGCTCGACTCCGCTTCCGAGGCGCAACCCGGCTGCAGTCCGCGGCCTGATGAG
ACCTCCGCTTCTGATGGTTGTAGTAGTAGTAGTTTCTACGGCGCATCGTGGAACCCTAATGCGTTTTTCGCTATGCCGCT
GGCTAATGCTGGAGCTGTTACAGGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis