Browse Element(s) Details


OsAffx.30146.2.S1_x_at

Description tigr:9637.m03026
TID=OsAffx.30146.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3601011/11hypothetical protein
LOC_Os10g342608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36070OsAffx.18005.1.S1_at11/119+20768152..20770338Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30146.2.S1_x_at--675--8012Chr09:20742880..20742904 (25 bp)
GGAGGCATCGAAACCGTGGACACCG
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--269--5391Chr09:20742950..20742974 (25 bp)
GAAGCATTGGATTAAAACTCACGGG
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--436--2573Chr09:20742981..20743005 (25 bp)
AACGGCGGATGAAACTGGCGCTTCC
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--285--4631Chr09:20743034..20743058 (25 bp)
GCGATGGCTTCGACGGCGACGACAA
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--306--2232Chr09:20743055..20743079 (25 bp)
ACAAGGTGGGCGAGTACTCGATCCA
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--904--1172Chr09:20743067..20743091 (25 bp)
AGTACTCGATCCAGGCATTCACCAT
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--685--9392Chr09:20743233..20743257 (25 bp)
TCGTTGGCTTCTTGGCGTGGACGTC
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--593--4214Chr09:20743265..20743289 (25 bp)
CCGCCGTCGTGCCAAGAAAACTTGC
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--479--2393Chr09:20743282..20743306 (25 bp)
AAACTTGCGTTTTCTCCATGGATTC
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--802--10593Chr09:20743293..20743317 (25 bp)
TTCTCCATGGATTCGGCGTGCTCGA
LOC_Os09g36010
OsAffx.30146.2.S1_x_at--1158--3773Chr09:20743319..20743343 (25 bp)
CTCGACGTCGGCTTCCAAGCGGGAG
LOC_Os09g36010
Target Sequence 
GGAGGCATCGAAACCGTGGACACCGGCGGCGACGGCGCCGTGGTTACGCCGGGGAGCTGCGGAGGCGAGGGAAGCATTGG
ATTAAAACTCACGGGAGGCGGAACGGCGGATGAAACTGGCGCTTCCGGCGGCGGCAAAGGCGCCGTCGTACGTGGCGATG
GCTTCGACGGCGACGACAAGGTGGGCGAGTACTCGATCCAGGCATTCACCATCCTCCCACTGGAGAGCGGCGGCGGCAGC
GCTGGGCTCGTTGGCTTCTTGGCGTGGACGTCTTCACCGCCGCCGTCGTGCCAAGAAAACTTGCGTTTTCTCCATGGATT
CGGCGTGCTCGAGCTCGACGTCGGCTTCCAAGCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30146.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis