Browse Element(s) Details


OsAffx.30170.1.S1_at

Description tigr:9637.m03176
TID=OsAffx.30170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3745011/11hypothetical protein
LOC_Os09g373702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37360OsAffx.18026.1.S1_at11/119+21574181..21575278Pectinesterase family protein
LOC_Os09g37370OsAffx.30170.1.S1_at2/119+21577085..21577429hypothetical protein
LOC_Os09g37380OsAffx.30167.1.S1_at11/119+21579431..21579853auxin induced protein, putative
LOC_Os09g37390Os.51408.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37390OsAffx.25944.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed
LOC_Os09g37420OsAffx.30169.1.S1_at1/119+21591758..21592348auxin induced protein, putative, expressed
LOC_Os09g37430OsAffx.30169.1.S1_at11/119+21593851..21594536auxin induced protein, putative
LOC_Os09g37440OsAffx.6505.1.S1_at11/119+21595723..21596157auxin induced protein, putative
LOC_Os09g37450OsAffx.30170.1.S1_at11/119+21598106..21598390hypothetical protein
LOC_Os09g37460OsAffx.18028.1.S1_at11/119+21599242..21599706auxin induced protein, putative, expressed
LOC_Os09g37470OsAffx.30169.1.S1_at1/119+21600648..21601248auxin induced protein, putative, expressed
LOC_Os09g37480Os.18493.1.S1_at11/119+21602448..21603061auxin induced protein, putative, expressed
LOC_Os09g37490Os.51408.1.S1_at11/119+21604182..21606542Auxin responsive protein
LOC_Os09g37500Os.50785.1.S1_at11/119+21608790..21609471auxin induced protein, putative, expressed
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30170.1.S1_at--198--3431Chr09:21598137..21598161 (25 bp)
CAGAGGCATCTCTTCTAAGCAGGCA
LOC_Os09g37450
OsAffx.30170.1.S1_at--405--8271Chr09:21598141..21598165 (25 bp)
GGCATCTCTTCTAAGCAGGCACAAG
LOC_Os09g37450
OsAffx.30170.1.S1_at--1109--2711Chr09:21598153..21598177 (25 bp)
AAGCAGGCACAAGACATACTCCATC
LOC_Os09g37450
OsAffx.30170.1.S1_at--251--392Chr09:21598175..21598199 (25 bp)
ATCACCGACGCATCGCACGGCAACG
LOC_Os09g37450
OsAffx.30170.1.S1_at--1066--3311Chr09:21598190..21598214 (25 bp)
CACGGCAACGTGATCCTACCGTCGT
LOC_Os09g37450
OsAffx.30170.1.S1_at--922--8211Chr09:21598193..21598217 (25 bp)
GGCAACGTGATCCTACCGTCGTCGC
LOC_Os09g37450
OsAffx.30170.1.S1_at--272--2672Chr09:21598223..21598247 (25 bp)
AAGCCGAACTCCTCCCGGGACATGG
LOC_Os09g37450
OsAffx.30170.1.S1_at--291--4171Chr09:21598267..21598291 (25 bp)
CGCCGTGCCGAGGTACAGCAATGGC
LOC_Os09g37450
OsAffx.30170.1.S1_at--1122--4171Chr09:21598306..21598330 (25 bp)
CCCGTCGGCAAATGGCTCCAAATGG
LOC_Os09g37450
OsAffx.30170.1.S1_at--557--3791Chr09:21598321..21598345 (25 bp)
CTCCAAATGGAAGCAATCTGACTAC
LOC_Os09g37450
OsAffx.30170.1.S1_at--782--471Chr09:21598336..21598360 (25 bp)
ATCTGACTACCAAATGGCTCCGGCA
LOC_Os09g37450
Target Sequence 
CAGAGGCATCTCTTCTAAGCAGGCACAAGACATACTCCATCACCGACGCATCGCACGGCAACGTGATCCTACCGTCGTCG
CCGGCGAAGCCGAACTCCTCCCGGGACATGGTCAGGAGCTCGCCGAAGACCGCCGTGCCGAGGTACAGCAATGGCACCTC
GAACCGCGCCCCGTCGGCAAATGGCTCCAAATGGAAGCAATCTGACTACCAAATGGCTCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis