Browse Element(s) Details


OsAffx.30187.2.S1_at

Description tigr:9639.m00995
TID=OsAffx.30187.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g105309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10500OsAffx.10633.1.S1_at8/1111+5732590..5738801retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10510Os.8815.1.S1_at11/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10510Os.57464.1.S1_x_at1/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10510Os.12591.2.S1_x_at1/1111+5740430..5743620Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.11991.1.S1_at11/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10520Os.57464.1.S1_x_at1/1111+5751112..5755413Alcohol dehydrogenase 2, putative, expressed
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein
LOC_Os11g10540OsAffx.18782.1.S1_at11/1111+5769517..5773026hypothetical protein
LOC_Os11g10550Os.50870.2.S1_at10/1111+5772483..5783307Leucine Rich Repeat family protein, expressed
LOC_Os11g10560OsAffx.18783.1.S1_at11/1111+5788060..5789251hypothetical protein
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30187.2.S1_at--249--4171Chr11:5767806..5767830 (25 bp)
CGCCTTGCTTCGTGCAGACCATCAT
LOC_Os11g10530
OsAffx.30187.2.S1_at--461--3791NONE
CTCGTGAGCACAGGGATCGCTGCAA
NONE
OsAffx.30187.2.S1_at--632--8911NONE
TGAGCACAGGGATCGCTGCAAAGGT
NONE
OsAffx.30187.2.S1_at--219--3311Chr11:5763797..5763819 (23 bp)
CACAGGGATCGCTGCAAAGGTATGA
LOC_Os11g10530
OsAffx.30187.2.S1_at--846--7651Chr11:5763793..5763817 (25 bp)
GGGATCGCTGCAAAGGTATGACATA
LOC_Os11g10530
OsAffx.30187.2.S1_at--88--6391Chr11:5763791..5763815 (25 bp)
GATCGCTGCAAAGGTATGACATATT
LOC_Os11g10530
OsAffx.30187.2.S1_at--690--1011Chr11:5763780..5763804 (25 bp)
AGGTATGACATATTGGATTGATGAA
LOC_Os11g10530
OsAffx.30187.2.S1_at--839--6291Chr11:5763761..5763785 (25 bp)
GATGAAAAGTTTGTGTTCTTGTTGG
LOC_Os11g10530
OsAffx.30187.2.S1_at--920--8671Chr11:5763750..5763774 (25 bp)
TGTGTTCTTGTTGGCATACACCATG
LOC_Os11g10530
OsAffx.30187.2.S1_at--968--6731Chr11:5763747..5763771 (25 bp)
GTTCTTGTTGGCATACACCATGAAG
LOC_Os11g10530
OsAffx.30187.2.S1_at--553--36113Chr11:12296957..12296995 (25 bp)
CTTGTTGGCATACACCATGAAGTGT
NONE
Target Sequence 
CGCCTTGCTTCGTGCAGACCATCATCCCGGCACTTCCTTCTTTCGGCGGCGGATGGAGGCACCGGCGGGTGGCGGCTACC
TGCTTGGTGGCCAACCGGCGAGGTGCTACGGAGGACACTCCACCGGCAGCAACGGCGAGGGTTTCGGAGGACACCCGGCC
ACATCGCCACCTTCGTCCAGCTGGGTTTCTCTCCCTCGTGAGCACAGGGATCGCTGCAAAGGTATGACATATTGGATTGA
TGAAAAGTTTGTGTTCTTGTTGGCATACACCATGAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30187.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis